genome.fa.s10.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  152  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41255897--41256036	54	2.6	54	85	4	192	39	22	7	30	1.82
41255628--41255955	81	4.1	81	83	3	196	30	23	7	37	1.83
41255870--41256149	54	5.2	53	73	11	190	37	20	9	32	1.84
41255912--41256066	81	1.9	81	85	7	217	40	20	9	30	1.83
41255910--41256148	27	8.8	27	76	7	171	39	20	8	31	1.83
41256167--41256244	27	2.9	27	79	11	97	38	21	17	21	1.93
41257403--41257450	25	2.0	24	83	4	60	31	25	18	25	1.98
41257489--41257545	9	5.9	9	73	15	51	35	8	21	35	1.84
41257487--41257557	20	3.5	20	94	0	124	35	11	21	32	1.89
41257498--41257552	11	5.4	11	70	16	55	36	12	20	30	1.90
41257604--41257766	23	7.0	24	88	5	237	26	20	22	30	1.98
41257604--41257752	47	3.2	47	94	2	248	27	19	22	30	1.98
41257604--41257766	70	2.3	70	87	7	233	26	20	22	30	1.98
41257959--41258022	31	2.1	31	90	0	101	35	15	23	25	1.94
41260689--41261005	27	11.7	27	88	2	404	28	24	8	38	1.84
41260714--41261150	27	16.2	27	84	4	139	32	23	8	35	1.84
41260998--41261235	54	4.4	55	78	5	207	39	19	9	31	1.83
41261253--41261330	27	2.9	26	75	11	77	38	20	19	21	1.94
41262486--41262533	25	2.0	24	83	4	60	31	25	18	25	1.98
41262646--41262809	23	7.0	24	89	6	239	27	20	22	29	1.98
41262646--41262795	47	3.2	47	94	3	250	28	19	22	30	1.98
41262647--41262788	70	2.0	69	91	4	232	27	19	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41263001--41263063	31	2.1	31	87	3	92	36	15	22	25	1.94
41265732--41266047	27	11.7	27	87	3	404	28	24	8	38	1.84
41265757--41266192	27	16.2	27	84	5	139	32	23	8	36	1.84
41266040--41266277	54	4.4	55	78	5	207	39	19	9	31	1.83
41266295--41266372	27	2.9	26	75	11	77	38	20	19	21	1.94
41267531--41267578	25	2.0	24	83	4	60	31	25	18	25	1.98
41267692--41267855	23	7.0	24	89	6	239	27	20	22	29	1.98
41267692--41267841	47	3.2	47	94	3	250	28	19	22	30	1.98
41267693--41267834	70	2.0	69	91	4	232	27	19	21	30	1.98
41268048--41268111	31	2.1	31	87	0	92	37	15	21	25	1.93
41271863--41271951	45	2.0	45	86	0	124	38	23	12	25	1.90
41293419--41293574	85	1.8	85	79	8	183	25	17	25	32	1.97
41297503--41297572	27	2.6	27	93	2	122	32	27	11	28	1.91
41301756--41301885	40	3.2	40	82	4	165	23	28	24	23	2.00
41301756--41301919	40	4.1	40	78	4	145	21	28	25	25	1.99
41308679--41308748	27	2.6	27	97	2	131	31	27	12	28	1.93
41310712--41310773	29	2.2	27	86	11	81	25	17	22	33	1.96
41312614--41312679	26	2.6	26	78	7	73	22	18	18	40	1.91
41312651--41312775	26	5.0	26	67	15	86	18	18	21	41	1.90
41316691--41316821	29	4.5	29	84	1	138	25	17	32	24	1.97
41339862--41339929	35	1.9	35	88	5	102	35	13	14	36	1.85
41341777--41341804	12	2.3	12	100	0	56	7	25	7	60	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41351538--41351567	2	15.0	2	100	0	60	50	0	0	50	1.00
41352276--41352420	40	3.6	41	84	6	181	24	24	26	23	2.00
41357639--41357820	40	4.6	40	80	8	160	24	27	23	24	2.00
41365626--41365816	40	4.8	40	82	5	210	24	28	22	24	1.99
41365601--41365816	79	2.7	81	79	8	230	25	27	22	24	2.00
41373591--41373729	40	3.5	40	86	4	158	23	29	23	23	1.99
41373591--41373782	79	2.4	81	82	6	223	25	28	22	23	1.99
41381613--41381797	40	4.7	40	81	6	189	24	28	22	23	1.99
41389213--41389429	46	4.7	45	74	8	161	24	29	19	26	1.98
41389861--41389893	16	2.1	16	94	0	57	30	15	12	42	1.83
41392817--41392860	21	2.1	21	91	0	70	13	2	43	40	1.57
41397495--41397537	23	1.9	23	90	4	70	55	0	9	34	1.32
41397890--41397969	2	40.0	2	100	0	160	50	0	0	50	1.00
41398084--41398133	24	2.1	24	100	0	100	34	28	4	34	1.76
41401936--41402014	39	2.0	39	95	0	140	45	11	17	25	1.82
41403185--41403209	8	3.1	8	100	0	50	52	0	0	48	1.00
41404015--41404039	2	12.5	2	100	0	50	52	0	0	48	1.00
41405705--41405753	18	2.7	17	81	12	53	32	0	0	67	0.91
41407722--41407786	22	3.0	22	81	0	67	12	24	24	38	1.90
41410486--41410528	22	2.0	22	86	9	61	9	18	23	48	1.76
41410665--41410729	33	2.0	33	84	6	87	24	26	20	29	1.99
41411437--41411467	7	4.4	7	95	0	53	25	3	12	58	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41412470--41412648	59	3.1	59	85	0	234	35	4	7	52	1.51
41413954--41413986	13	2.6	13	90	4	50	48	12	0	39	1.40
41415603--41415678	38	2.0	38	94	2	136	28	11	32	26	1.92
41427490--41427578	29	3.0	30	77	9	101	34	20	5	39	1.76
41429140--41429247	43	2.5	43	84	0	144	27	24	25	22	2.00
41432908--41433046	40	3.5	39	83	4	163	22	28	24	25	2.00
41434778--41434909	40	3.3	40	85	4	169	25	20	26	27	1.99
41440314--41440361	25	1.9	25	100	0	96	29	8	27	35	1.86
41443284--41443455	54	3.2	54	80	3	177	31	23	8	37	1.84
41443301--41443452	81	1.9	81	88	2	234	28	23	8	39	1.84
41443301--41443452	27	5.6	27	85	3	207	28	23	8	39	1.84
41443282--41443596	27	11.7	27	80	9	124	34	23	9	32	1.86
41443405--41443599	81	2.4	81	85	4	223	36	25	9	28	1.87
41443444--41443623	54	3.3	53	88	4	229	39	23	11	26	1.88
41443444--41443642	27	7.4	27	86	2	122	39	22	12	26	1.89
41443443--41443626	81	2.3	80	87	3	253	38	23	11	26	1.89
41446102--41446287	40	4.7	40	86	5	218	25	22	26	26	2.00
41446136--41446320	80	2.3	79	79	11	191	28	21	25	24	1.99
41451308--41451445	45	3.1	45	85	5	163	20	21	15	43	1.88
41453305--41453353	21	2.3	22	80	16	59	46	2	0	51	1.12
41455431--41455460	14	2.1	14	100	0	60	23	13	36	26	1.92
41455383--41455502	62	1.9	62	94	0	213	23	15	33	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41455445--41455598	48	3.2	47	86	7	204	24	16	31	27	1.96
41458682--41458779	24	4.0	24	88	6	153	36	5	37	20	1.75
41459896--41459956	31	2.0	31	90	0	95	39	22	24	13	1.90
41461934--41461981	25	1.9	25	91	0	78	35	25	14	25	1.94
41462024--41462084	20	3.0	20	87	0	95	36	9	21	32	1.86
41462134--41462238	24	4.4	24	91	3	167	29	20	22	26	1.99
41462134--41462238	47	2.2	48	91	3	167	29	20	22	26	1.99
41462444--41462507	31	2.1	31	90	0	101	35	15	25	23	1.94
41465080--41465214	29	4.7	29	86	3	155	23	31	15	29	1.95
41465026--41465215	58	3.3	58	77	4	179	24	33	16	26	1.96
41472224--41472358	29	4.7	29	84	3	146	23	30	15	30	1.95
41472170--41472359	58	3.3	58	77	4	170	24	32	16	26	1.96
41478802--41478849	25	1.9	25	86	0	69	33	25	16	25	1.96
41478892--41478952	20	3.0	20	87	0	95	36	9	21	32	1.86
41478998--41479102	24	4.4	24	91	3	167	29	20	22	26	1.99
41478998--41479102	47	2.2	48	91	3	167	29	20	22	26	1.99
41479311--41479371	31	2.0	31	90	0	95	31	16	26	26	1.96
41480286--41480366	33	2.4	34	77	8	94	28	18	23	29	1.98
41480286--41480378	32	2.8	31	73	9	78	25	20	25	27	1.99
41488901--41489102	40	5.1	40	81	2	183	36	15	30	17	1.91
41495475--41495553	29	2.7	29	86	5	106	27	32	15	24	1.95
41496195--41496232	2	19.0	2	88	0	58	44	2	2	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41501742--41501806	19	3.2	19	79	16	69	53	4	0	41	1.21
41501816--41501849	11	3.2	11	95	4	61	64	8	0	26	1.22
41501802--41501862	10	5.9	10	79	12	61	63	4	0	31	1.15
41501802--41501860	21	2.8	22	82	10	79	66	5	0	28	1.13
41502306--41502390	42	2.0	42	100	0	170	29	18	16	35	1.93
41503600--41503755	63	2.5	63	87	0	213	24	27	23	25	2.00
41504385--41504439	27	2.1	26	86	3	74	72	3	16	7	1.21
41504390--41504439	24	2.0	26	84	7	68	72	4	16	8	1.24
41505951--41506148	46	4.3	46	76	11	161	30	19	28	22	1.98
41507839--41507974	41	3.3	41	91	1	202	34	21	23	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444