genome.fa.s10.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  184  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51542684--51543025	27	12.7	27	83	8	376	40	7	23	28	1.82
51544780--51544864	14	5.0	19	65	26	73	34	12	0	52	1.40
51544779--51544864	33	2.6	33	98	0	163	33	13	0	52	1.41
51564110--51564138	13	2.2	13	100	0	58	31	0	13	55	1.39
51566031--51566236	39	5.2	40	92	4	289	24	27	23	24	2.00
51566054--51566238	39	4.7	41	94	3	292	24	28	23	23	2.00
51566047--51566238	79	2.4	80	87	6	293	25	28	22	23	2.00
51566250--51566285	18	1.9	19	88	5	56	47	22	5	25	1.73
51574238--51574443	39	5.2	40	87	4	244	25	26	23	25	2.00
51582967--51582995	13	2.2	13	100	0	58	31	0	13	55	1.39
51583205--51583312	46	2.3	46	91	0	171	25	25	27	21	1.99
51583234--51583404	46	3.7	47	80	7	160	29	21	26	22	1.99
51584988--51585175	49	3.8	49	85	2	259	26	18	25	29	1.98
51584983--51585175	100	1.9	100	93	0	332	26	19	24	29	1.98
51587484--51587522	21	1.9	20	89	5	60	12	38	28	20	1.89
51587772--51587931	83	1.9	82	96	1	293	31	17	20	31	1.95
51589469--51589632	71	2.3	71	98	0	319	19	27	17	35	1.94
51589469--51589666	71	2.8	70	90	3	249	21	27	17	33	1.95
51591848--51591887	21	1.9	21	85	10	55	32	25	17	25	1.97
51605024--51605141	41	3.1	41	60	28	98	32	17	28	21	1.96
51604992--51605155	71	2.3	71	100	0	328	35	17	28	18	1.94
51612799--51612994	47	4.1	47	94	3	349	33	11	29	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51612799--51612994	95	2.1	94	95	2	349	33	11	29	26	1.91
51614723--51614898	46	3.8	46	79	12	216	20	21	29	28	1.98
51614720--51614891	93	1.8	93	96	0	317	20	21	29	27	1.98
51622264--51622439	46	3.8	46	79	12	216	20	21	29	28	1.98
51622261--51622432	93	1.8	93	96	0	317	20	21	29	27	1.98
51624454--51624480	8	3.4	8	100	0	54	51	0	22	25	1.48
51624847--51625242	40	9.9	40	87	0	540	23	19	29	28	1.98
51643550--51643621	34	2.2	33	90	7	110	25	23	22	29	1.99
51645598--51645646	17	2.8	18	74	22	50	24	18	22	34	1.96
51646468--51646633	40	4.2	40	78	8	162	25	22	27	24	2.00
51646468--51646617	79	1.9	79	84	5	205	26	22	27	24	2.00
51653586--51653634	17	2.8	18	74	22	50	24	18	22	34	1.96
51654455--51654621	40	4.2	40	79	6	169	25	21	27	25	1.99
51661588--51661636	17	2.8	18	74	22	50	24	18	22	34	1.96
51662458--51662624	40	4.2	40	79	6	169	25	21	27	25	1.99
51669217--51669420	53	3.8	53	74	4	167	38	17	23	21	1.93
51672917--51672941	7	3.6	7	100	0	50	12	0	28	60	1.32
51673810--51673879	27	2.5	28	86	2	106	25	11	28	34	1.91
51678054--51678257	53	3.8	53	77	4	167	39	17	22	21	1.92
51682963--51683052	45	2.0	45	97	0	171	33	18	15	32	1.93
51686546--51686764	40	5.6	40	90	4	331	22	22	26	28	1.99
51686546--51686764	79	2.8	80	91	4	349	22	22	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51693593--51693814	40	5.6	40	91	1	349	22	23	26	27	1.99
51696492--51696667	47	3.8	47	75	9	146	23	28	21	26	1.99
51699356--51699441	32	2.6	33	76	9	86	29	25	18	26	1.98
51701050--51701146	24	4.0	24	88	5	142	20	40	5	34	1.75
51707442--51707567	46	2.7	46	93	0	207	30	26	21	21	1.98
51709960--51710029	15	4.9	15	81	11	85	61	14	12	11	1.57
51709960--51710025	30	2.3	28	85	10	96	62	15	12	10	1.55
51712894--51713076	40	4.7	40	86	8	243	24	21	27	26	1.99
51712894--51713070	77	2.2	79	85	8	236	24	22	28	24	1.99
51721038--51721217	40	4.6	39	81	11	167	25	21	28	25	1.99
51721038--51721211	75	2.2	78	81	11	198	25	21	28	24	1.99
51724448--51724619	46	3.7	46	75	11	181	30	26	19	23	1.98
51724453--51724623	93	1.8	93	93	2	299	29	26	19	23	1.98
51727784--51727864	33	2.4	35	77	10	96	33	22	16	28	1.95
51728174--51728226	26	2.0	26	82	7	63	22	16	20	39	1.92
51729477--51729571	12	7.9	12	65	9	50	21	38	6	33	1.78
51729473--51729578	24	4.4	23	91	7	158	18	39	5	35	1.75
51733610--51733767	40	4.0	40	79	4	151	26	24	26	22	2.00
51733610--51733797	80	2.3	80	79	12	206	26	23	27	22	2.00
51741678--51741835	40	4.0	40	79	4	151	26	24	26	22	2.00
51741678--51741865	80	2.3	80	79	12	206	26	23	27	22	2.00
51744678--51744897	40	5.4	40	85	3	271	23	23	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51744683--51744897	83	2.7	80	86	5	274	22	24	26	26	2.00
51749908--51749952	23	2.0	23	91	4	74	46	17	4	31	1.68
51749934--51749984	19	2.9	17	83	11	66	37	17	7	37	1.79
51749905--51749962	22	2.6	22	86	7	82	43	18	3	34	1.68
51749918--51749975	19	2.8	20	84	10	64	39	17	6	36	1.76
51755048--51755092	23	2.0	23	86	4	65	48	15	4	31	1.65
51755045--51755102	22	2.6	22	84	7	73	44	17	3	34	1.65
51755074--51755124	19	2.9	17	77	11	57	35	17	7	39	1.79
51756879--51757141	47	5.6	46	72	13	148	23	29	17	28	1.97
51756884--51757047	46	3.5	47	79	12	160	23	29	17	29	1.97
51757476--51757533	30	1.9	30	92	0	98	32	25	8	32	1.86
51761320--51761508	24	8.0	24	90	4	278	28	21	22	28	1.99
51761341--51761507	23	7.1	23	93	2	262	28	20	22	28	1.99
51761341--51761508	47	3.6	47	91	3	275	28	20	22	28	1.98
51761566--51761622	9	5.9	9	73	15	51	35	21	8	35	1.84
51761554--51761624	20	3.5	20	94	0	124	32	21	11	35	1.89
51761559--51761613	11	5.4	11	70	16	55	30	20	12	36	1.90
51762922--51763264	27	12.7	27	83	7	376	40	7	23	28	1.82
51762923--51763264	135	2.5	135	96	0	614	40	7	23	28	1.82
51764982--51765165	40	4.6	40	82	2	172	28	21	26	23	1.99
51765022--51765210	80	2.4	80	77	5	184	24	22	29	23	1.99
51767940--51768097	40	4.0	40	79	4	151	26	24	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51767940--51768127	80	2.3	80	79	12	206	26	23	27	22	2.00
51770936--51771155	40	5.4	40	85	3	271	23	23	26	26	2.00
51770941--51771155	83	2.7	80	86	5	274	22	24	26	26	2.00
51777464--51777514	19	2.9	17	83	11	66	37	7	17	37	1.79
51777486--51777543	22	2.7	21	86	7	80	34	3	18	43	1.68
51778476--51778690	40	5.5	40	78	8	201	24	26	23	26	2.00
51778476--51778689	79	2.7	78	82	5	227	23	26	23	26	2.00
51786582--51786731	40	3.7	40	86	4	203	26	28	22	24	1.99
51791858--51792020	70	2.3	71	98	1	319	19	28	17	34	1.94
51791858--51792054	70	2.8	70	90	4	249	20	28	17	33	1.95
51802837--51802961	55	2.3	55	84	0	151	24	31	30	14	1.94
51806398--51806509	27	4.2	26	85	7	143	37	23	24	15	1.93
51806398--51806509	54	2.1	54	88	3	163	37	23	24	15	1.93
51806613--51806660	25	1.9	25	83	8	62	20	14	25	39	1.91
51808327--51808537	40	5.3	40	84	3	257	25	26	23	24	2.00
51811423--51811493	24	3.0	24	97	0	133	26	38	0	35	1.57
51811400--51811493	48	1.9	48	83	10	120	24	37	3	35	1.72
51813770--51813881	27	4.1	27	79	7	120	40	22	22	15	1.91
51815303--51815373	24	3.0	24	93	0	115	26	38	1	33	1.65
51818605--51818797	40	4.8	40	85	4	239	23	22	27	25	2.00
51827303--51827487	79	2.3	82	83	7	229	24	24	27	23	2.00
51827304--51827495	40	4.8	40	79	7	151	24	24	28	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51827303--51827520	79	2.7	79	79	6	183	24	23	27	24	2.00
51835351--51835535	79	2.3	82	83	7	229	24	24	27	23	2.00
51835352--51835543	40	4.8	40	79	7	151	24	24	28	22	2.00
51835351--51835568	79	2.7	79	79	6	183	24	23	27	24	2.00
51845242--51845354	29	3.9	29	90	4	113	26	23	15	35	1.94
51845254--51845354	29	3.4	29	97	2	193	24	24	14	35	1.94
51854366--51854544	47	3.8	48	80	8	215	28	16	31	22	1.96
51856827--51856971	67	2.2	67	89	0	227	29	31	20	18	1.96
51859493--51859532	18	2.3	18	86	4	64	15	45	27	12	1.82
51860786--51860961	27	6.5	26	69	15	117	27	21	7	42	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444