genome.fa.s10.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  177  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49277000--49277065	27	2.5	27	72	2	62	37	22	10	28	1.88
49277953--49278034	34	2.4	34	78	8	87	23	25	23	28	2.00
49285820--49285949	50	2.6	49	89	3	181	24	17	28	29	1.97
49288777--49288862	28	3.1	28	93	0	136	45	22	11	20	1.83
49296116--49296194	28	2.9	26	80	10	77	46	18	8	25	1.78
49296130--49296204	28	2.7	28	89	0	105	49	20	9	21	1.76
49302096--49302134	6	6.5	6	84	0	51	58	15	5	20	1.55
49302096--49302134	18	2.2	18	95	0	69	58	15	5	20	1.55
49302085--49302167	12	6.8	12	76	10	62	50	15	13	20	1.77
49302605--49302719	27	4.3	27	87	0	140	26	21	18	33	1.96
49302704--49302844	27	5.2	27	82	0	120	28	8	22	40	1.83
49302795--49302979	27	6.8	27	84	1	226	37	6	21	34	1.79
49302956--49303073	27	4.4	27	76	7	87	29	8	21	40	1.82
49302795--49303006	81	2.6	81	78	5	221	36	7	21	34	1.81
49302704--49303132	54	8.0	52	77	8	204	32	8	21	37	1.83
49302971--49303125	27	5.8	26	74	9	116	29	9	22	39	1.85
49312345--49312404	23	2.6	23	91	0	102	23	31	31	13	1.93
49318198--49318296	28	3.5	28	83	4	110	28	16	26	29	1.97
49321264--49321362	28	3.5	28	81	9	112	29	25	16	29	1.96
49327161--49327259	28	3.5	28	81	9	112	29	25	16	29	1.96
49334654--49334752	28	3.5	29	82	6	114	28	15	26	30	1.96
49343152--49343458	24	12.9	24	97	1	546	35	25	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49350271--49350413	40	3.6	39	79	8	119	27	23	27	21	1.99
49350309--49350436	40	3.2	39	81	8	136	23	22	28	25	1.99
49358254--49358420	40	4.2	40	78	6	160	25	22	27	24	2.00
49364533--49364696	40	4.2	40	92	3	262	27	26	22	23	1.99
49366074--49366099	13	2.0	13	100	0	52	61	7	0	30	1.24
49368836--49368925	29	3.1	29	90	1	128	32	28	11	27	1.91
49369130--49369172	16	2.7	16	85	0	50	9	13	16	60	1.58
49369771--49369795	9	2.8	9	100	0	50	88	0	0	12	0.53
49375817--49375980	24	6.7	24	73	6	114	19	25	21	33	1.97
49376562--49376601	21	1.9	21	85	10	55	35	0	27	37	1.57
49386619--49386840	40	5.6	40	94	1	376	22	22	26	27	1.99
49394827--49395047	40	5.6	40	92	2	367	23	22	26	28	1.99
49403138--49403238	39	2.5	40	85	1	132	30	22	24	21	1.99
49403138--49403320	40	4.6	40	82	3	181	27	22	26	23	1.99
49408612--49408794	40	4.6	40	83	3	181	23	26	22	27	1.99
49410927--49410985	26	2.3	27	82	8	77	16	23	20	38	1.92
49411035--49411108	24	3.1	25	82	5	100	17	22	18	40	1.91
49412478--49412572	43	2.2	41	78	7	100	31	18	22	27	1.97
49424986--49425055	21	3.2	21	66	18	61	21	12	25	40	1.89
49432245--49432454	40	5.3	40	83	4	257	26	26	22	24	2.00
49432240--49432454	79	2.7	79	85	5	267	26	26	23	24	2.00
49443365--49443575	40	5.3	40	81	3	239	26	26	21	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49445346--49445488	40	3.6	40	85	3	193	25	23	25	26	2.00
49463327--49463429	50	2.1	50	98	0	197	35	19	7	36	1.81
49463503--49463663	43	3.7	43	72	9	123	31	23	19	25	1.98
49465888--49465912	13	1.9	13	100	0	50	60	16	0	24	1.36
49468994--49469091	28	3.5	28	84	4	108	29	16	24	29	1.96
49476675--49476772	28	3.5	28	84	4	108	29	16	24	29	1.96
49482288--49482449	24	6.6	24	74	6	119	32	30	12	24	1.93
49487961--49487988	8	3.5	8	100	0	56	10	0	0	89	0.49
49491619--49491771	39	3.9	39	90	0	225	24	30	20	24	1.99
49491588--49491770	78	2.3	79	90	1	278	23	29	22	24	1.99
49499657--49499838	39	4.6	39	86	1	213	23	29	22	24	1.99
49499697--49499839	39	3.7	38	89	3	223	22	30	20	26	1.99
49499657--49499838	77	2.3	79	89	2	269	23	29	22	24	1.99
49506134--49506293	44	3.7	43	72	7	119	33	26	17	22	1.96
49506134--49506287	43	3.6	43	74	9	127	32	27	17	22	1.96
49522819--49522949	29	4.5	29	88	0	163	29	15	31	23	1.95
49530784--49530914	29	4.5	29	88	0	163	29	15	31	23	1.95
49535160--49535345	40	4.7	40	86	5	200	25	20	26	26	1.99
49535213--49535368	80	2.0	79	81	8	183	27	19	26	26	1.99
49537236--49537295	26	2.2	27	94	5	104	45	6	18	30	1.75
49537616--49537721	53	2.0	53	100	0	212	37	16	18	26	1.93
49541278--49541391	45	2.5	45	91	0	183	21	18	28	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49544193--49544393	108	1.8	110	85	4	282	23	25	18	32	1.97
49544167--49544400	55	4.4	53	76	9	228	22	25	17	34	1.96
49546331--49546948	41	15.1	41	84	3	604	30	20	24	23	1.98
49547002--49547083	35	2.3	35	85	4	103	25	2	23	48	1.63
49547153--49547256	8	14.1	8	74	17	50	14	1	39	44	1.56
49547149--49547259	22	5.1	22	70	16	79	15	1	36	45	1.57
49547101--49547241	7	19.3	7	72	15	56	17	2	34	46	1.60
49547198--49547244	15	3.3	14	80	14	60	14	0	46	38	1.45
49547951--49547994	14	3.1	14	80	9	54	20	0	47	31	1.50
49548449--49548503	22	2.5	22	77	16	60	23	0	30	45	1.53
49548475--49548520	7	6.6	7	79	0	56	19	0	36	43	1.51
49548443--49548520	21	3.6	21	76	10	68	24	0	32	43	1.54
49549828--49549882	24	2.2	26	78	12	62	38	7	1	52	1.40
49551785--49551921	9	14.6	9	73	8	112	45	21	2	31	1.64
49551785--49551919	57	2.4	57	83	0	162	45	21	2	31	1.64
49551790--49551919	48	2.7	48	79	3	145	45	21	2	30	1.64
49557492--49557540	21	2.3	22	89	10	84	28	20	48	2	1.60
49557504--49557550	21	2.2	21	84	0	58	29	21	46	2	1.63
49557888--49557995	44	2.5	44	83	1	128	22	18	29	29	1.97
49557878--49558272	43	9.2	42	76	7	267	21	21	27	29	1.98
49557878--49558321	43	10.4	41	74	10	180	21	20	26	31	1.98
49557878--49558296	85	4.9	82	72	10	252	21	21	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49558137--49558319	85	2.2	85	80	5	201	21	18	26	34	1.96
49565073--49565262	29	6.6	29	90	1	274	26	32	15	25	1.96
49567776--49567816	19	2.2	19	95	0	73	14	21	29	34	1.93
49567783--49567825	19	2.3	19	95	0	77	18	16	25	39	1.91
49570061--49570123	18	3.4	18	74	10	65	33	19	26	20	1.96
49570375--49570424	23	2.2	23	82	13	59	42	22	14	22	1.88
49570491--49570572	27	3.1	27	85	1	103	21	18	19	40	1.92
49570529--49570585	27	2.1	27	80	6	62	26	12	22	38	1.89
49570569--49570908	27	12.6	27	90	0	511	37	15	15	32	1.88
49573837--49573923	37	2.4	37	84	1	104	37	27	13	20	1.91
49575324--49575364	21	2.0	20	90	4	64	29	0	21	48	1.50
49579041--49579224	40	4.7	39	84	8	230	25	27	22	24	2.00
49579041--49579224	78	2.3	81	85	6	243	25	27	22	24	2.00
49587196--49587379	40	4.7	39	83	8	221	26	27	22	24	2.00
49587196--49587379	78	2.3	80	84	6	232	26	27	22	24	2.00
49592442--49592528	43	2.0	44	84	13	117	22	26	22	27	2.00
49592884--49593077	43	4.5	43	96	0	334	29	34	24	11	1.90
49592884--49593102	86	2.6	86	91	1	334	30	33	23	12	1.92
49593074--49593153	38	2.1	38	90	0	124	27	30	21	21	1.98
49595700--49595917	43	5.1	43	88	3	309	30	33	23	12	1.92
49595700--49595892	85	2.3	86	92	0	316	30	33	24	11	1.91
49604664--49604886	120	1.9	120	84	6	308	40	9	20	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49608811--49608933	47	2.6	47	96	0	219	31	8	30	29	1.88
49608911--49609178	48	5.6	48	94	0	437	33	8	27	29	1.87
49609227--49609312	37	2.3	37	95	0	154	24	19	32	23	1.98
49618364--49618404	21	2.0	20	85	4	55	29	0	19	51	1.47
49626330--49626502	94	1.8	94	86	0	247	23	30	18	27	1.98
49630457--49630557	43	2.3	43	76	6	98	28	17	24	28	1.98
49633165--49633217	27	2.0	27	88	0	79	24	15	18	41	1.89
49634992--49635037	23	2.0	23	84	12	60	45	10	6	36	1.65
49634999--49635043	23	2.0	23	82	8	56	40	13	8	37	1.76
49635817--49635848	15	2.1	15	100	0	64	31	12	31	25	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444