genome.fa.s10.2.7.7.80.10.50.1000.316.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  316  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91239712--91239868	37	4.2	37	96	0	287	24	33	17	24	1.97
91239916--91240530	48	12.8	48	91	0	951	31	26	6	35	1.83
91254360--91254403	17	2.6	17	85	10	63	65	2	2	29	1.16
91257040--91257136	40	2.4	42	86	6	130	30	16	25	26	1.97
91258215--91258267	26	2.0	27	85	7	74	24	15	22	37	1.92
91259747--91259810	32	2.0	32	96	3	121	39	23	6	31	1.79
91266202--91266254	26	2.0	27	85	7	74	24	15	22	37	1.92
91267734--91267794	32	1.9	32	86	0	86	36	21	8	34	1.83
91269525--91269563	2	19.0	2	94	5	69	48	2	0	48	1.15
91269782--91269820	19	2.2	17	86	9	51	61	2	2	33	1.23
91269782--91269821	18	2.2	19	86	4	55	62	2	2	32	1.22
91277050--91277167	41	3.1	41	60	28	98	32	17	28	21	1.96
91277018--91277181	71	2.3	71	100	0	328	35	17	28	18	1.94
91284572--91284734	70	2.3	71	97	2	319	35	17	27	19	1.94
91287855--91288022	40	4.2	40	80	6	180	25	22	27	25	2.00
91290205--91290313	56	2.0	53	82	12	132	36	18	16	28	1.92
91291507--91291673	40	4.2	40	77	6	151	26	22	26	24	2.00
91304153--91304183	5	6.2	5	100	0	62	77	0	0	22	0.77
91305764--91305813	15	3.3	15	79	17	59	38	4	0	58	1.17
91307832--91307971	27	5.2	26	87	8	133	35	21	24	18	1.95
91307832--91307970	54	2.6	55	86	5	178	35	21	24	18	1.96
91309583--91309717	26	5.2	26	94	1	227	36	25	5	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91309583--91309717	51	2.6	52	96	1	245	36	25	5	33	1.78
91311872--91311915	22	2.0	22	100	0	88	31	31	13	22	1.93
91313493--91313532	19	2.0	22	85	14	59	32	47	2	17	1.61
91313594--91313733	27	5.2	28	90	5	184	35	22	24	17	1.96
91315336--91315471	26	5.2	26	94	0	236	36	25	5	33	1.78
91327658--91327742	26	3.3	26	96	0	161	34	3	24	37	1.73
91329526--91329810	136	2.1	136	97	0	534	24	19	24	31	1.98
91331616--91331655	21	2.0	20	85	5	53	47	27	0	25	1.52
91336361--91336408	22	2.0	25	84	11	66	29	0	25	45	1.53
91336541--91336744	40	5.1	40	83	0	219	25	22	26	25	2.00
91344571--91344618	22	2.0	25	84	11	66	29	0	25	45	1.53
91344750--91344953	40	5.1	40	84	0	228	25	22	26	25	2.00
91352772--91352819	22	2.0	25	84	11	66	29	0	25	45	1.53
91352952--91353155	40	5.1	40	84	0	219	25	22	26	25	2.00
91362551--91362722	93	1.8	93	96	0	317	27	29	21	20	1.98
91362544--91362719	46	3.8	46	79	12	216	28	29	21	20	1.98
91370320--91370427	38	2.8	38	90	1	171	23	22	14	39	1.91
91370381--91370444	31	2.1	31	93	0	110	21	23	15	39	1.92
91370634--91370753	24	5.0	23	82	14	138	25	23	21	29	1.99
91370626--91370753	47	2.6	48	86	9	163	25	23	20	30	1.98
91370803--91370862	20	3.0	20	95	0	111	33	20	10	36	1.86
91370803--91370857	11	5.4	11	70	16	55	30	20	10	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91378387--91378493	38	2.8	37	91	4	178	23	22	14	39	1.91
91378410--91378510	38	3.1	32	79	19	118	23	21	15	38	1.92
91378702--91378820	24	5.0	24	85	9	154	26	24	21	27	1.99
91378702--91378820	47	2.5	48	89	8	172	26	24	21	27	1.99
91378871--91378950	20	4.0	20	96	0	142	32	20	10	37	1.85
91378871--91378945	11	7.4	11	68	17	63	30	20	10	38	1.86
91378993--91379040	25	1.9	25	86	0	69	25	16	25	33	1.96
91387755--91387786	15	2.0	17	88	11	50	43	28	0	28	1.55
91389124--91389166	23	1.9	23	85	4	61	46	25	4	23	1.71
91389946--91390083	43	3.2	43	77	12	142	31	23	18	26	1.98
91412535--91412636	41	2.5	41	88	0	141	30	16	31	21	1.96
91415151--91415267	54	2.2	53	82	10	139	38	21	10	29	1.86
91415151--91415573	27	15.7	26	78	9	108	35	21	8	34	1.84
91415244--91415427	81	2.3	81	83	1	226	28	22	8	40	1.83
91415251--91415428	54	3.3	54	81	3	196	29	20	8	41	1.82
91415325--91415455	54	2.4	54	80	0	136	29	20	9	39	1.85
91415295--91415454	81	2.0	81	81	2	187	28	20	9	41	1.83
91415406--91415545	54	2.6	54	84	4	183	39	21	7	31	1.82
91415420--91415574	54	2.9	53	77	11	154	40	20	8	30	1.82
91415421--91415574	81	1.9	81	85	7	215	40	20	8	31	1.82
91415420--91415632	54	3.9	55	79	6	141	40	18	9	31	1.82
91415666--91415753	27	3.3	27	74	6	79	43	20	17	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91416910--91416957	25	1.9	25	91	0	78	35	25	14	25	1.94
91416996--91417052	9	5.9	9	73	15	51	35	8	21	35	1.84
91416994--91417064	20	3.5	20	94	0	124	35	11	21	32	1.89
91417005--91417059	11	5.4	11	70	16	55	36	12	20	30	1.90
91417110--91417278	23	7.2	23	86	3	239	28	21	21	28	1.98
91417111--91417278	47	3.6	47	94	0	284	28	21	21	28	1.99
91417109--91417278	70	2.4	70	91	1	270	28	21	21	28	1.99
91417426--91417505	42	1.9	42	84	5	108	28	11	16	43	1.82
91423951--91423975	13	1.9	13	100	0	50	16	32	28	24	1.96
91425660--91425857	71	2.8	70	92	3	294	33	17	28	20	1.95
91425726--91425843	41	3.1	41	60	28	98	32	17	28	21	1.96
91425694--91425857	71	2.3	71	100	0	328	35	17	28	18	1.94
91428775--91428830	28	2.0	28	96	0	103	46	12	0	41	1.42
91429803--91429917	58	2.0	58	98	0	221	23	20	16	39	1.92
91433325--91433478	79	1.9	79	97	0	290	22	22	33	22	1.98
91438874--91438929	26	2.2	26	96	0	103	32	7	25	35	1.83
91446981--91447083	25	4.0	26	93	3	183	31	6	25	36	1.82
91446981--91447079	51	1.9	51	100	0	198	31	5	26	37	1.78
91457086--91457168	43	1.9	43	100	0	166	32	7	15	44	1.74
91458220--91458431	46	4.6	46	80	8	218	26	20	30	22	1.98
91458220--91458494	140	2.0	142	81	5	326	27	19	30	22	1.98
91468730--91468903	46	3.7	46	75	6	163	28	21	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91468921--91469046	49	2.5	50	77	1	128	28	16	25	29	1.97
91470113--91470215	51	2.0	50	88	1	152	20	24	32	23	1.98
91470133--91470236	50	2.1	51	80	5	113	16	25	32	25	1.96
91470246--91470284	21	1.9	20	84	5	51	15	33	28	23	1.95
91471949--91472113	46	3.5	46	72	15	133	29	19	28	22	1.98
91471949--91472214	47	5.7	46	75	9	141	27	19	29	23	1.98
91471993--91472211	46	4.7	47	76	8	164	27	19	29	24	1.98
91479788--91479951	47	3.5	46	82	8	165	29	20	28	21	1.98
91479880--91479979	47	2.2	46	82	8	114	27	16	30	27	1.96
91481118--91481156	21	1.9	21	94	5	71	10	35	30	23	1.88
91485626--91485650	5	5.0	5	100	0	50	0	40	60	0	0.97
91485797--91485854	25	2.3	26	82	5	75	67	3	0	29	1.07
91485809--91485857	26	2.0	24	88	8	71	63	4	0	32	1.13
91485828--91485875	22	2.3	20	85	7	60	70	4	0	25	1.04
91485828--91485886	21	2.8	21	80	12	59	69	8	0	22	1.15
91485932--91485964	15	2.1	16	88	11	50	69	0	0	30	0.88
91491932--91491963	2	16.0	2	100	0	64	50	0	0	50	1.00
91492996--91493084	29	3.3	29	73	20	102	41	12	2	43	1.54
91496160--91496212	25	2.2	24	86	3	70	24	26	15	33	1.95
91496168--91496282	25	4.6	25	76	7	74	24	22	20	33	1.97
91499022--91499071	24	2.1	24	96	0	91	36	4	20	40	1.71
91499022--91499060	14	3.1	14	72	27	50	35	5	20	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91500870--91500906	14	2.8	14	88	8	51	70	16	5	8	1.30
91501114--91501154	19	2.2	19	86	0	55	4	12	7	75	1.16
91514036--91514814	75	10.1	74	86	8	936	31	17	18	32	1.94
91514036--91514815	149	5.1	150	86	7	991	31	17	18	32	1.94
91515339--91515375	14	2.8	14	88	8	51	70	16	5	8	1.30
91515584--91515625	19	2.2	20	86	4	59	4	11	7	76	1.15
91517499--91517597	30	3.3	30	91	2	155	24	50	6	19	1.70
91518124--91518213	23	3.8	23	78	8	83	37	6	4	51	1.49
91518124--91518214	25	3.8	25	75	8	82	37	6	4	51	1.48
91518173--91518282	29	4.0	28	73	15	97	30	6	4	58	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444