genome.fa.s10.2.7.7.80.10.50.1000.362.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  362  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105272974--105273057	43	1.9	45	83	9	111	34	1	2	61	1.16
105284826--105284882	29	2.0	29	92	0	96	61	8	1	28	1.36
105287839--105287865	14	1.9	14	100	0	54	44	14	14	25	1.84
105289702--105289909	40	5.2	40	87	1	276	26	28	20	23	1.99
105291961--105291988	12	2.3	12	100	0	56	39	14	21	25	1.91
105296008--105296068	3	20.3	3	100	0	122	32	0	0	67	0.91
105296013--105296123	15	7.9	14	81	9	50	25	5	0	68	1.16
105297653--105297721	6	11.3	6	75	9	59	8	7	4	79	1.04
105297663--105297706	19	2.3	20	84	11	65	6	9	2	81	0.94
105297653--105297721	31	2.3	30	87	7	95	8	7	4	79	1.04
105300662--105300695	17	2.0	17	88	0	50	61	23	2	11	1.43
105304298--105304590	146	2.0	146	87	2	428	35	26	12	24	1.92
105308638--105308859	124	1.8	122	83	3	293	31	11	23	32	1.90
105308818--105308968	40	3.8	40	77	11	141	26	24	27	21	2.00
105308855--105308984	40	3.2	40	79	2	154	23	23	28	23	2.00
105308817--105308984	80	2.1	80	82	6	207	26	23	27	22	2.00
105314465--105314523	25	2.3	25	82	5	73	20	22	18	38	1.93
105320155--105320407	53	4.8	52	79	9	239	36	16	24	22	1.94
105321851--105321996	44	3.1	48	73	12	151	28	28	18	24	1.98
105322578--105322616	20	2.0	20	85	10	53	35	20	0	43	1.52
105323613--105323664	25	2.1	25	100	0	104	28	15	15	40	1.88
105327545--105327767	39	5.7	40	86	6	287	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105327545--105327800	79	3.3	79	80	6	227	25	21	27	25	1.99
105335982--105336053	29	2.5	29	86	8	94	31	15	26	26	1.95
105338735--105338956	40	5.6	40	84	6	267	24	21	27	25	1.99
105338735--105338963	79	2.9	80	85	6	295	25	21	27	25	1.99
105338735--105338989	79	3.2	79	82	10	281	25	21	27	25	1.99
105343558--105343808	49	5.1	49	97	0	466	34	10	26	28	1.90
105343882--105343963	37	2.2	36	93	4	137	20	21	34	23	1.97
105345415--105345458	21	2.1	21	83	8	54	38	11	9	40	1.73
105356646--105356674	13	2.2	13	100	0	58	31	0	13	55	1.39
105362680--105362814	29	4.7	30	84	13	171	25	34	14	25	1.94
105362680--105362826	57	2.6	56	85	11	185	26	33	13	26	1.94
105363038--105363082	16	2.8	16	79	0	54	11	13	20	55	1.68
105367118--105367177	24	2.5	24	100	0	120	33	0	38	28	1.57
105368608--105368695	27	3.2	27	84	7	115	14	25	25	35	1.94
105370898--105371121	40	5.6	40	86	2	315	25	24	27	22	2.00
105370898--105371157	80	3.3	79	86	5	328	25	24	26	23	2.00
105374511--105374641	69	1.9	69	90	0	208	28	12	20	38	1.90
105377905--105378286	50	7.6	50	76	3	390	27	18	25	29	1.98
105377906--105378295	101	3.9	100	77	5	304	27	18	24	29	1.98
105377904--105378295	151	2.6	151	95	0	685	27	18	25	29	1.98
105385405--105385461	13	4.6	12	79	12	62	24	7	1	66	1.26
105385415--105385467	25	2.3	22	80	9	61	24	5	1	67	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105387102--105387163	26	2.4	26	80	0	61	17	3	3	75	1.07
105396439--105396602	43	3.8	43	77	6	163	28	15	24	31	1.96
105401953--105401982	15	2.0	15	100	0	60	40	6	20	33	1.78
105405853--105405881	2	14.5	2	100	0	58	48	0	0	51	1.00
105406407--105406482	28	2.7	28	95	0	134	39	10	1	48	1.46
105406381--105406527	7	21.1	7	78	6	111	34	14	1	49	1.53
105406470--105406526	27	2.1	27	90	0	87	28	15	1	54	1.52
105415659--105415698	2	20.0	2	100	0	80	50	0	0	50	1.00
105420960--105421126	3	55.3	3	90	3	246	34	1	2	61	1.17
105422650--105422680	12	2.6	12	94	0	53	6	0	25	67	1.14
105431135--105431207	33	2.2	32	80	2	83	39	0	2	57	1.13
105431842--105431872	3	10.3	3	100	0	62	67	0	0	32	0.91
105433129--105433173	20	2.2	21	84	11	58	62	6	4	26	1.39
105433196--105433240	19	2.6	18	82	10	58	66	0	4	28	1.11
105433199--105433249	26	1.9	26	84	11	68	68	0	3	27	1.07
105436895--105436927	9	3.7	9	91	0	57	39	24	12	24	1.89
105436895--105436929	18	1.9	18	100	0	70	37	22	11	28	1.89
105438118--105438154	2	19.0	2	94	5	67	0	51	0	48	1.00
105438517--105438570	28	1.9	28	84	0	72	35	11	24	29	1.90
105441130--105441160	13	2.5	12	90	10	53	35	12	12	38	1.82
105453877--105453928	25	2.0	25	82	10	61	25	15	19	40	1.90
105455407--105455513	26	4.2	26	89	2	171	36	23	7	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105455407--105455513	51	2.1	52	94	1	189	36	23	7	32	1.83
105460773--105460815	21	2.1	20	87	12	61	48	20	11	18	1.79
105460827--105460875	25	2.0	26	84	8	66	24	16	20	38	1.92
105462359--105462466	26	4.2	26	91	0	180	36	23	7	33	1.83
105467801--105467933	54	2.5	54	83	0	149	25	17	14	42	1.87
105467830--105467960	54	2.4	54	81	0	145	30	14	12	41	1.83
105468305--105468369	24	2.7	24	79	9	71	35	23	3	38	1.70
105474671--105474704	1	34.0	1	87	0	50	0	0	94	5	0.32
105476535--105476578	21	2.1	22	87	8	65	40	2	0	56	1.11
105477274--105477316	17	2.5	17	88	0	59	44	11	32	11	1.77
105479133--105479177	11	3.9	11	80	11	54	35	0	2	62	1.08
105481305--105481531	46	5.0	46	89	3	309	39	14	24	21	1.91
105481310--105481531	91	2.4	91	87	3	313	40	14	24	21	1.90
105481310--105481558	91	2.7	91	85	5	254	40	14	23	21	1.90
105486228--105486346	60	2.0	60	89	0	184	52	11	1	34	1.48
105486537--105486584	17	2.9	17	77	17	57	0	33	2	64	1.05
105486539--105486593	11	5.5	10	76	20	53	0	36	1	61	1.06
105486865--105486939	26	2.8	25	75	15	71	65	1	0	33	1.01
105486865--105486939	28	2.8	26	74	9	69	65	1	0	33	1.01
105488826--105488916	37	2.4	37	92	1	155	24	32	18	24	1.97
105489012--105489275	49	5.4	49	93	0	447	28	32	9	29	1.88
105493426--105493463	8	4.9	8	80	6	51	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105493590--105493634	2	23.0	2	95	4	83	51	0	0	48	1.00
105493702--105493740	16	2.4	16	91	0	60	69	0	30	0	0.89
105494445--105494469	11	2.3	11	100	0	50	0	12	0	88	0.53
105496213--105496442	46	5.0	46	97	0	388	39	14	23	22	1.91
105496214--105496495	46	6.0	46	92	2	359	40	14	23	21	1.90
105504902--105504979	40	2.0	40	97	0	147	46	8	16	28	1.77
105507227--105507307	29	2.6	31	80	13	94	27	9	12	50	1.71
105509382--105509486	28	3.7	28	77	1	111	35	20	22	20	1.96
105511709--105511766	27	2.1	27	81	6	64	18	24	18	37	1.94
105525391--105525421	13	2.4	13	94	0	53	9	0	16	74	1.07
105528313--105528345	17	1.9	17	93	0	57	42	0	12	45	1.41
105530410--105530450	21	2.0	21	86	9	59	19	34	26	19	1.96
105543045--105543160	41	2.8	41	79	7	119	27	17	25	30	1.97
105545413--105545441	9	3.2	9	100	0	58	13	0	20	65	1.26
105555664--105555700	16	2.3	16	100	0	74	45	13	5	35	1.66
105557063--105557092	15	2.1	14	93	6	51	63	0	0	36	0.95
105557988--105558028	9	4.6	9	90	0	64	48	17	7	26	1.73
105558049--105558107	6	9.5	6	85	7	82	16	0	5	77	0.93
105558060--105558098	20	2.0	20	89	0	60	20	0	7	71	1.10
105558133--105558170	18	2.1	18	95	0	67	13	0	44	42	1.43
105560586--105560679	47	2.0	47	100	0	188	34	6	19	40	1.77
105563595--105564052	231	2.0	227	94	1	799	37	15	13	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105580736--105580786	26	2.0	26	88	0	75	33	11	11	43	1.78
105589193--105589272	40	2.2	34	75	23	97	16	40	20	23	1.91
105589157--105589299	41	3.5	41	88	2	207	18	39	20	21	1.92
105599736--105599781	23	2.0	22	88	12	67	36	4	10	47	1.58
105606449--105606494	23	2.0	22	88	12	67	36	4	10	47	1.58
105609727--105609765	6	6.5	6	93	0	51	15	23	0	61	1.33
105609727--105609765	12	3.2	12	88	0	60	15	23	0	61	1.33
105610899--105611006	38	2.8	38	91	1	180	23	23	14	38	1.92
105610922--105611023	31	3.1	31	80	17	132	23	22	15	38	1.93
105611215--105611332	24	4.9	24	84	9	143	26	24	21	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444