Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  203  of  444  ( 53255 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56782507--56782544
20
1.9
20
88
0
58
15
21
21
42
1.89
56782516--56782553
20
1.9
20
89
10
60
15
13
21
50
1.78
56783435--56783460
10
2.6
10
100
0
52
26
11
11
50
1.73
56785149--56785198
26
2.0
25
84
4
64
70
2
24
4
1.15
56785169--56785260
40
2.3
41
79
9
100
56
2
29
11
1.47
56785506--56785580
36
2.1
36
94
0
132
36
12
20
32
1.89
56786996--56787033
20
1.9
20
84
10
51
13
10
21
55
1.67
56789688--56789784
30
3.2
30
71
8
81
28
27
15
27
1.96
56791436--56791476
11
3.8
11
87
6
66
75
7
7
9
1.18
56791434--56791481
21
2.3
20
79
10
60
77
6
8
8
1.14
56792363--56792419
11
5.5
10
73
22
55
77
1
17
3
1.00
56792352--56792419
21
3.2
20
80
12
66
76
2
17
2
1.04
56792363--56792419
5
11.0
5
77
17
55
77
1
17
3
1.00
56792363--56792419
16
3.7
14
80
17
60
77
1
17
3
1.00
56792481--56792512
12
2.7
12
95
0
55
71
3
15
9
1.24
56792488--56792555
30
2.3
30
79
5
75
63
2
22
11
1.41
56794753--56794850
30
3.3
30
67
13
76
27
30
15
26
1.96
56813431--56813490
29
2.1
29
93
0
102
41
30
0
28
1.56
56813437--56813484
15
3.3
15
73
5
53
43
27
0
29
1.55
56815992--56816142
27
5.6
27
88
4
198
46
24
5
23
1.74
56815992--56816143
53
2.8
54
85
4
191
46
25
5
23
1.74
56816073--56816376
27
11.3
27
84
2
324
38
20
15
25
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56816127--56816384
27
9.6
27
85
0
327
38
19
17
24
1.93
56819261--56819474
40
5.4
40
93
2
344
22
21
27
28
1.99
56827231--56827442
40
5.3
40
93
2
331
23
21
27
27
1.99
56833232--56833276
14
3.3
14
78
6
56
48
15
0
35
1.45
56834789--56834817
13
2.2
13
100
0
58
62
10
0
27
1.28
56837202--56837261
29
2.1
29
90
0
93
41
28
0
30
1.56
56837208--56837255
15
3.3
15
73
5
53
43
25
0
31
1.55
56839751--56839790
14
2.9
14
88
0
53
7
32
10
50
1.64
56840007--56840035
10
2.7
11
94
5
51
72
6
3
17
1.21
56845220--56845259
19
2.1
19
85
0
53
25
35
17
22
1.95
56851038--56851134
30
3.2
30
73
2
88
28
13
27
29
1.94
56854948--56855032
30
2.8
29
83
13
109
12
22
0
64
1.27
56854946--56855031
6
14.5
6
69
6
50
12
22
0
65
1.26
56854983--56855038
18
3.1
18
84
5
69
7
19
1
71
1.18
56854946--56855032
12
7.2
12
76
5
59
12
21
0
65
1.26
56855101--56855157
5
11.0
5
75
20
55
3
17
1
77
1.00
56855101--56855157
16
3.7
14
82
15
60
3
17
1
77
1.00
56855101--56855168
21
3.2
21
76
15
61
2
17
2
76
1.04
56856091--56856126
11
3.4
11
88
3
56
13
5
8
72
1.27
56856086--56856127
11
3.7
11
81
12
50
11
7
7
73
1.23
56858561--56858599
20
2.0
19
85
5
51
30
33
12
23
1.92
56861632--56861670
18
2.2
18
86
4
53
71
2
17
7
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56861648--56861692
20
2.2
21
84
4
56
68
2
24
4
1.19
56863201--56863243
21
2.1
21
91
4
70
44
23
16
16
1.86
56866708--56866793
39
2.2
39
93
0
145
26
25
26
20
1.99
56866727--56866815
39
2.3
39
86
5
117
23
28
28
20
1.99
56872437--56872461
13
1.9
13
100
0
50
28
0
8
64
1.22
56875062--56875098
19
1.9
19
94
0
65
56
13
8
21
1.63
56876960--56877056
30
3.2
30
76
2
97
29
26
14
28
1.95
56881612--56881651
19
2.1
19
85
0
53
25
35
17
22
1.95
56882941--56882980
19
2.1
19
86
9
55
27
35
15
22
1.94
56884190--56884237
14
3.4
14
85
0
60
18
31
6
43
1.75
56883984--56884732
373
2.0
376
92
1
1256
25
26
14
33
1.95
56885094--56885133
14
2.9
14
88
0
53
50
7
32
10
1.64
56891390--56891432
17
2.5
17
92
3
68
9
13
2
74
1.16
56896693--56896745
27
2.0
27
85
14
74
71
3
18
5
1.21
56896826--56896868
12
3.6
12
90
0
59
62
2
20
13
1.42
56899590--56899812
46
4.8
46
78
10
231
30
26
19
23
1.98
56899598--56899767
93
1.8
93
89
0
268
30
27
20
22
1.98
56903217--56903295
27
3.2
27
60
29
66
26
29
20
24
1.99
56903194--56903365
47
3.7
47
89
6
246
27
30
20
21
1.98
56907795--56907866
29
2.5
29
88
2
101
25
31
20
22
1.98
56909236--56909279
16
2.8
16
85
0
61
27
2
22
47
1.63
56911714--56911884
93
1.8
93
93
0
297
28
29
20
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56911706--56911881
46
3.8
46
80
12
216
29
28
19
21
1.98
56912303--56912362
30
2.0
30
90
0
93
30
25
8
36
1.85
56916743--56916836
44
2.2
41
83
11
109
26
22
20
30
1.98
56928628--56928809
99
1.8
99
96
2
339
27
18
25
28
1.98
56928633--56928819
49
3.8
49
81
5
243
28
17
25
28
1.98
56933757--56933853
30
3.2
30
77
2
97
28
25
15
29
1.96
56938055--56938192
51
2.8
51
83
5
176
27
19
24
28
1.99
56946823--56946847
13
1.9
13
100
0
50
64
8
0
28
1.22
56946867--56946911
22
2.1
22
87
4
65
57
8
0
33
1.30
56947092--56947139
20
2.4
20
71
0
51
35
18
25
20
1.95
56948727--56948765
18
2.1
19
85
4
53
7
23
2
66
1.30
56948729--56948832
48
2.2
49
79
8
115
12
27
0
58
1.40
56948783--56948832
18
2.8
18
87
0
73
14
28
0
58
1.37
56948758--56948839
24
3.4
24
77
0
101
12
26
0
60
1.31
56948836--56948932
42
2.3
42
89
1
142
14
22
5
57
1.57
56951051--56951075
13
1.9
13
100
0
50
64
8
0
28
1.22
56952961--56953009
20
2.3
20
82
10
53
32
8
14
44
1.74
56954674--56954698
12
2.1
12
100
0
50
76
0
16
8
1.02
56954668--56954723
18
3.1
18
76
5
51
69
3
19
7
1.27
56954674--56954755
30
2.7
31
81
5
105
64
1
21
12
1.33
56957854--56958007
40
3.8
40
85
0
173
22
26
22
27
1.99
56957826--56958007
80
2.3
80
82
0
202
22
26
23
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56960042--56960086
20
2.2
21
84
11
58
24
28
13
33
1.93
56961405--56961576
93
1.8
93
92
2
292
27
30
21
20
1.98
56961397--56961572
46
3.8
46
78
14
200
28
29
21
20
1.98
56963803--56963841
13
2.9
13
88
3
51
51
10
30
7
1.64
56969827--56969923
30
3.2
30
73
2
88
29
27
13
28
1.94
56973300--56973324
13
1.9
13
100
0
50
36
16
32
16
1.90
56976085--56976181
30
3.2
30
69
13
74
26
28
15
28
1.96
56978746--56978791
12
4.2
11
76
18
51
76
4
17
2
1.06
56978873--56978897
12
2.1
12
100
0
50
76
0
16
8
1.02
56978867--56978922
18
3.1
18
79
5
60
69
1
19
8
1.24
56978873--56978954
30
2.7
31
81
5
96
64
1
20
13
1.34
56980271--56980315
14
3.3
14
84
6
65
48
13
0
37
1.42
56980327--56980396
22
3.3
22
64
28
60
38
15
11
34
1.84
56980298--56980403
42
2.5
42
98
1
203
40
14
12
33
1.83
56985620--56985665
11
4.0
12
83
11
69
15
2
8
73
1.16
56985619--56985650
12
2.5
13
90
10
57
12
0
6
81
0.87
56986815--56986859
14
3.3
14
84
6
65
48
13
0
37
1.42
56986871--56986940
22
3.3
22
64
28
60
38
15
11
34
1.84
56986842--56986947
42
2.5
42
98
1
203
40
14
12
33
1.83
56991143--56991192
15
3.4
15
86
2
66
10
18
12
60
1.59
57001308--57001388
32
2.5
34
84
6
105
44
12
12
30
1.79
57004097--57004136
20
2.1
19
85
4
53
27
32
12
27
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57006967--57007034
28
2.5
28
83
4
77
55
13
8
22
1.65
57007297--57007344
20
2.4
20
82
6
62
33
18
22
25
1.97
57011249--57011280
11
2.6
13
90
9
50
75
9
6
9
1.20
57012201--57012306
42
2.5
42
98
1
203
33
12
14
40
1.83
57012289--57012333
14
3.3
14
84
6
65
37
0
13
48
1.42
57013475--57013513
11
3.5
11
82
0
51
76
10
2
10
1.10
57018773--57018877
42
2.5
42
95
3
185
34
11
13
40
1.80
57018860--57018904
14
3.3
14
84
6
65
37
0
13
48
1.42
57024373--57024412
19
2.1
19
90
0
62
30
35
12
22
1.91
57024414--57024446
16
1.9
18
88
11
52
15
30
30
24
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444