genome.fa.s10.2.7.7.80.10.50.1000.361.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  361  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105027704--105027799	45	2.1	45	96	0	174	14	32	4	48	1.63
105027784--105027829	16	2.9	16	78	18	51	0	26	2	71	0.97
105029601--105029661	20	3.0	20	75	15	63	11	26	21	40	1.87
105037118--105037225	26	4.2	26	89	4	155	32	7	24	36	1.83
105037118--105037225	52	2.1	52	92	0	180	32	7	24	36	1.83
105038403--105038432	8	3.8	8	90	0	51	43	26	26	3	1.70
105038819--105038962	54	2.7	54	95	2	254	17	25	23	34	1.96
105038822--105038980	27	5.9	27	83	11	193	18	25	22	33	1.96
105038822--105038980	81	2.0	80	85	8	216	18	25	22	33	1.96
105041431--105041456	9	2.9	9	100	0	52	11	19	23	46	1.82
105043437--105043644	79	2.6	80	78	6	190	24	30	23	22	1.99
105043537--105043644	40	2.7	40	86	0	135	21	30	25	23	1.99
105054048--105054084	18	2.1	18	94	0	65	51	16	5	27	1.66
105055151--105055448	50	5.9	50	81	2	355	25	18	27	29	1.98
105055154--105055698	101	5.3	101	81	6	628	25	17	26	29	1.98
105055259--105055648	213	1.8	214	92	0	656	26	17	26	29	1.97
105055472--105055712	50	4.8	50	86	1	295	26	17	26	29	1.98
105055207--105055739	263	2.0	265	87	1	766	26	17	26	29	1.97
105055159--105055744	314	1.9	314	88	2	899	26	17	26	29	1.97
105059574--105059607	13	2.6	13	90	0	50	38	11	11	38	1.79
105060245--105060527	50	5.7	50	82	4	304	26	16	27	30	1.97
105060245--105060856	100	6.0	100	78	6	645	26	17	26	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105060394--105060472	25	3.2	25	61	25	58	25	13	31	29	1.94
105060253--105060880	312	2.0	312	94	0	1094	27	16	26	29	1.97
105060564--105060852	50	5.8	50	85	1	339	27	17	25	29	1.98
105063791--105063966	43	4.1	43	93	0	298	32	31	23	13	1.92
105065667--105065774	37	2.9	37	94	0	180	25	32	18	23	1.97
105065915--105066156	48	5.0	48	92	0	403	31	26	6	35	1.82
105069747--105069922	46	3.8	46	79	12	216	20	21	29	28	1.98
105069744--105069915	93	1.8	93	96	0	317	20	21	29	27	1.98
105071734--105072073	168	2.0	168	87	2	495	30	15	22	32	1.95
105073598--105073769	40	4.3	41	84	6	210	26	22	25	26	2.00
105076756--105076972	40	5.5	40	88	3	298	22	23	29	24	1.99
105084827--105085080	40	6.5	39	85	4	250	22	22	28	25	1.99
105084827--105085080	80	3.2	80	82	5	286	22	22	28	25	1.99
105088574--105088618	15	2.9	16	81	15	51	77	6	6	8	1.11
105088575--105088627	12	4.5	12	76	4	54	81	7	5	5	1.00
105091881--105091913	17	2.1	16	88	11	50	30	0	0	69	0.88
105091960--105092018	21	2.8	22	80	7	61	22	0	8	69	1.15
105091989--105092038	26	2.0	24	88	7	73	30	0	6	64	1.18
105096071--105096383	157	2.0	157	96	0	572	26	13	20	39	1.89
105097073--105097116	22	2.0	22	90	0	70	54	0	0	45	0.99
105097136--105097177	13	2.9	14	80	13	50	54	0	0	45	0.99
105097140--105097176	16	2.3	16	86	13	58	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105097209--105097266	15	3.6	15	72	17	53	50	1	1	46	1.22
105098079--105098108	5	6.0	5	100	0	60	40	0	60	0	0.97
105106071--105106108	17	2.1	19	85	9	53	47	2	0	50	1.15
105106597--105106658	18	3.3	18	71	13	54	62	0	3	33	1.11
105107090--105107133	18	2.5	17	85	7	52	38	0	2	59	1.10
105107679--105107715	18	2.1	18	100	0	74	62	10	16	10	1.55
105108529--105108715	89	2.1	89	91	1	302	41	11	21	25	1.87
105114373--105114470	37	2.6	37	90	0	151	23	30	22	23	1.99
105114611--105115044	48	9.0	48	92	2	719	31	27	6	35	1.82
105128438--105128526	44	2.0	46	86	4	128	44	3	6	44	1.46
105133595--105133692	19	5.2	19	90	7	146	37	15	10	36	1.81
105133617--105133673	17	3.5	15	88	11	53	35	15	10	38	1.82
105133595--105133692	36	2.6	37	88	9	144	37	15	10	36	1.81
105133812--105133844	11	3.0	11	91	8	50	18	0	0	81	0.68
105135977--105136070	47	2.0	47	95	0	170	30	13	13	41	1.84
105148039--105148081	21	2.0	21	90	0	68	32	16	16	34	1.91
105149685--105149909	47	4.8	46	75	11	170	30	21	28	20	1.98
105154088--105154132	24	2.0	24	83	12	60	26	15	17	40	1.90
105158062--105158098	17	2.2	17	100	0	74	43	21	21	13	1.87
105162754--105162895	40	3.6	40	91	2	225	25	27	23	23	2.00
105167957--105168059	29	3.6	28	78	10	109	27	31	18	23	1.97
105176043--105176145	29	3.6	28	78	10	109	27	31	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105181719--105181754	2	18.0	2	100	0	72	50	0	0	50	1.00
105182203--105182252	13	3.4	14	77	20	57	58	0	0	42	0.98
105182694--105182732	20	2.0	20	94	0	69	35	0	7	56	1.28
105188828--105188902	34	2.2	34	81	6	91	29	21	22	26	1.99
105192676--105192726	21	2.4	21	93	0	93	37	23	21	17	1.94
105195190--105195397	53	3.9	54	78	9	208	21	24	18	36	1.95
105195201--105195389	55	3.5	53	80	7	186	20	23	19	35	1.95
105195376--105195497	47	2.6	47	93	0	208	27	23	13	35	1.93
105197275--105197581	155	2.0	154	92	0	515	24	19	25	30	1.98
105203422--105203561	27	5.2	28	90	5	184	35	22	24	17	1.96
105205170--105205331	78	2.1	78	96	0	297	37	24	5	32	1.79
105205170--105205331	26	6.2	26	94	0	261	37	24	5	32	1.79
105209439--105209484	21	2.1	22	88	4	67	32	4	6	56	1.45
105216709--105216756	25	1.9	25	86	0	69	33	25	16	25	1.96
105216800--105216858	20	3.0	20	97	0	109	37	10	20	32	1.86
105216804--105216858	11	5.4	11	70	16	55	38	10	20	30	1.87
105216909--105217027	24	5.0	24	88	5	170	28	21	22	26	1.99
105216909--105217027	47	2.5	48	89	5	170	28	21	22	26	1.99
105217219--105217312	31	3.1	31	95	3	172	39	15	21	23	1.92
105224829--105224876	25	1.9	25	86	0	69	33	25	16	25	1.96
105224920--105224978	20	3.0	20	97	0	109	37	10	20	32	1.86
105224924--105224978	11	5.4	11	70	16	55	38	10	20	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105225029--105225147	24	5.0	24	88	5	170	28	21	22	26	1.99
105225029--105225147	47	2.5	48	89	5	170	28	21	22	26	1.99
105225339--105225402	31	2.1	31	96	0	119	39	15	21	23	1.92
105234318--105234528	40	5.3	40	85	7	243	24	22	27	25	2.00
105234318--105234528	79	2.7	80	84	5	304	24	22	27	25	2.00
105238598--105238781	79	2.3	81	82	8	218	23	27	24	24	2.00
105238591--105238781	40	4.8	40	78	7	185	23	27	24	24	2.00
105248776--105248807	16	2.0	16	93	0	55	68	9	0	21	1.17
105251028--105251069	13	3.2	13	83	6	57	2	23	0	73	0.94
105251130--105251196	28	2.5	26	77	11	73	46	2	1	49	1.26
105255733--105255798	23	3.0	23	77	6	82	40	22	19	16	1.91
105256170--105256227	15	3.8	15	86	2	80	51	10	0	37	1.36
105256173--105256233	30	2.1	28	93	6	104	55	9	0	34	1.33
105256383--105256420	2	19.0	2	100	0	76	50	50	0	0	1.00
105256420--105256457	2	19.5	2	89	5	60	50	0	0	50	1.00
105258605--105258655	21	2.4	21	93	3	84	35	19	1	43	1.63
105258684--105258716	17	2.0	17	88	5	50	27	21	0	51	1.48
105258828--105258879	25	2.1	25	100	0	104	38	17	19	25	1.93
105259806--105259847	13	3.2	13	83	6	57	0	23	2	73	0.94
105260042--105260107	24	2.9	24	85	12	79	34	3	0	62	1.11
105260072--105260107	5	7.2	5	100	0	72	38	0	0	61	0.96
105260470--105260530	31	2.0	31	84	9	81	49	1	0	49	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105261598--105261626	14	2.0	15	93	6	51	62	3	6	27	1.37
105261931--105261991	22	2.7	22	87	10	88	19	0	26	54	1.45
105261931--105261990	21	2.8	21	89	5	84	18	0	26	55	1.43
105261974--105262002	8	3.8	8	95	4	51	13	0	41	44	1.44
105266896--105266951	3	18.7	3	100	0	112	32	33	0	33	1.58
105269349--105269486	18	7.7	18	91	4	226	36	11	15	36	1.84
105269349--105269493	72	2.0	71	96	4	265	36	11	15	36	1.83
105269375--105269509	18	7.0	22	89	9	103	36	9	16	37	1.81
105271351--105271388	18	2.1	18	85	9	51	63	0	2	34	1.09
105272963--105273012	22	2.3	21	79	6	55	30	2	2	66	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444