genome.fa.s10.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  155  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42236115--42236383	46	5.7	47	75	12	216	27	19	29	23	1.98
42239013--42239163	40	3.8	40	80	6	164	26	23	27	23	2.00
42239050--42239179	40	3.2	40	82	2	163	23	23	27	25	2.00
42246995--42247145	40	3.8	40	80	6	164	26	23	27	23	2.00
42247032--42247161	40	3.2	40	82	2	163	23	23	27	25	2.00
42251135--42251306	93	1.8	93	96	0	317	27	30	22	20	1.98
42251127--42251302	46	3.8	46	81	10	232	28	29	21	20	1.98
42256171--42256239	15	4.6	15	83	0	84	11	17	13	57	1.64
42256162--42256249	30	3.0	30	81	8	99	10	17	15	56	1.66
42258149--42258320	93	1.8	93	96	0	317	27	30	22	20	1.98
42258141--42258316	46	3.8	46	81	10	232	28	29	21	20	1.98
42260699--42260787	30	3.0	30	80	8	101	57	15	16	10	1.65
42260699--42260778	15	5.4	15	80	7	92	58	13	17	10	1.62
42260710--42260787	15	5.2	15	78	9	79	56	15	16	11	1.67
42263740--42263911	93	1.8	93	96	0	317	27	30	22	20	1.98
42263732--42263907	46	3.8	46	81	10	232	28	29	21	20	1.98
42269266--42269297	16	2.1	16	88	11	50	78	0	12	9	0.97
42270448--42270579	29	4.6	29	74	7	108	25	16	34	23	1.95
42277113--42277184	21	3.5	20	69	7	54	15	16	15	52	1.75
42277091--42277240	42	3.6	42	78	1	149	14	21	18	46	1.84
42282376--42282415	20	2.0	20	90	4	64	25	2	22	50	1.62
42284535--42284824	27	10.7	27	92	0	463	27	24	9	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42284749--42285022	27	10.2	27	78	7	162	37	21	9	31	1.85
42284817--42285023	80	2.6	79	82	6	220	41	20	9	28	1.83
42284817--42285103	27	10.7	27	78	4	204	41	19	9	29	1.83
42284812--42285103	81	3.6	81	77	6	263	40	19	8	30	1.82
42285124--42285201	27	2.9	27	74	11	79	37	19	20	23	1.95
42285883--42285958	20	3.9	20	85	8	95	36	11	18	32	1.87
42285903--42285958	11	5.5	11	75	16	66	37	14	17	30	1.90
42285884--42285952	29	2.4	29	78	9	70	37	11	17	33	1.86
42286008--42286130	26	4.8	26	92	1	187	26	21	22	28	1.99
42286348--42286426	31	2.5	31	93	0	140	26	17	26	29	1.98
42291702--42291876	86	2.0	86	100	0	350	41	10	5	42	1.62
42294943--42294986	21	2.2	20	84	12	54	36	9	11	43	1.72
42298699--42298906	40	5.2	39	82	3	202	25	25	23	25	2.00
42298699--42298905	80	2.6	80	82	3	238	25	26	23	25	2.00
42306725--42306932	40	5.2	39	82	3	202	25	25	23	25	2.00
42306725--42306931	80	2.6	80	82	3	238	25	26	23	25	2.00
42311432--42311618	40	4.7	40	80	2	178	27	24	24	24	2.00
42311432--42311639	40	5.2	40	80	4	177	26	23	24	25	2.00
42331597--42331640	19	2.4	18	85	7	54	45	9	15	29	1.77
42336966--42337015	19	2.6	19	83	0	73	12	34	32	22	1.90
42337980--42338198	47	4.7	46	72	14	162	24	28	17	29	1.97
42354815--42354869	21	2.6	21	88	0	83	29	27	32	10	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42365357--42365524	40	4.2	40	82	1	185	24	26	22	26	2.00
42373760--42373935	46	3.8	46	79	12	216	20	21	29	28	1.98
42373757--42373928	93	1.8	93	96	0	317	20	21	29	27	1.98
42381328--42381503	46	3.8	46	79	12	216	20	21	29	28	1.98
42381325--42381496	93	1.8	93	96	0	317	20	21	29	27	1.98
42394700--42394859	43	3.7	43	81	11	184	21	17	28	31	1.96
42397378--42397442	34	1.9	34	90	3	105	30	23	18	27	1.97
42398269--42398311	11	4.1	10	80	11	50	16	4	27	51	1.64
42400536--42400631	39	2.4	40	84	1	104	41	17	22	17	1.90
42400554--42400667	40	2.9	39	81	8	124	36	18	26	18	1.94
42405284--42405663	48	7.9	48	77	4	309	27	27	18	27	1.98
42405283--42405663	144	2.6	146	84	3	459	27	27	18	27	1.98
42415671--42415844	96	1.8	96	87	2	260	30	27	16	26	1.96
42415579--42415908	48	6.8	48	72	7	193	29	27	16	26	1.97
42416015--42416066	21	2.5	21	96	0	95	51	9	7	30	1.62
42424170--42424296	28	4.5	28	95	3	188	28	11	26	33	1.92
42424170--42424296	57	2.2	56	89	9	188	28	11	26	33	1.92
42427215--42427401	40	4.7	40	92	5	317	24	22	27	24	2.00
42435255--42435429	37	4.6	38	89	6	232	24	22	28	24	1.99
42441436--42441538	29	3.6	29	97	0	188	29	31	14	25	1.95
42448623--42448724	29	3.5	29	94	0	177	29	30	13	26	1.94
42448593--42448724	58	2.3	58	86	0	156	26	31	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42452564--42452621	21	2.7	22	84	5	66	34	10	22	32	1.88
42452697--42452743	25	2.0	24	83	8	60	29	21	23	25	1.99
42464821--42465028	40	5.2	39	82	1	209	25	26	21	25	2.00
42464821--42465027	80	2.6	80	82	3	238	26	26	21	25	2.00
42472104--42472309	80	2.6	81	84	3	247	26	26	21	25	2.00
42472107--42472311	40	5.1	40	81	3	216	26	25	21	25	2.00
42476554--42476640	37	2.3	36	94	5	147	25	34	19	20	1.96
42476710--42477028	49	6.2	49	81	11	343	31	29	8	31	1.86
42476773--42476802	14	2.1	14	100	0	60	33	43	0	23	1.54
42476724--42476851	63	2.0	63	95	0	229	31	32	6	29	1.82
42476787--42477032	49	5.0	49	94	0	384	29	29	8	32	1.88
42479487--42479655	43	4.0	43	71	11	132	29	28	17	24	1.97
42488561--42488611	20	2.7	19	82	14	54	41	0	23	35	1.55
42489262--42489382	46	2.7	44	83	7	136	30	19	28	22	1.98
42489262--42489575	49	6.7	49	72	10	156	28	20	28	23	1.99
42493469--42493653	40	4.7	40	85	6	218	25	22	26	25	2.00
42493469--42493686	79	2.7	79	76	17	220	26	22	26	24	2.00
42500022--42500207	40	4.7	40	86	5	227	25	22	26	25	2.00
42500022--42500240	80	2.8	80	79	12	238	26	22	26	24	2.00
42505105--42505271	40	4.2	40	84	2	194	23	26	22	26	2.00
42509591--42509615	2	12.5	2	100	0	50	52	0	0	48	1.00
42513570--42513594	13	1.9	13	100	0	50	40	36	0	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42516970--42517051	29	2.8	29	96	0	146	24	31	14	29	1.95
42524808--42524909	29	3.5	29	90	0	150	23	33	15	27	1.95
42529663--42529870	40	5.2	40	82	7	253	25	27	21	25	1.99
42529659--42529867	79	2.6	79	82	8	246	25	27	21	24	1.99
42530578--42530609	2	16.0	2	100	0	64	50	0	0	50	1.00
42532089--42532187	43	2.3	43	82	0	126	29	24	20	26	1.99
42532447--42532493	19	2.5	19	76	10	51	72	4	2	21	1.12
42532896--42532992	23	4.1	24	82	2	108	38	20	5	36	1.75
42536902--42536951	7	7.0	7	84	11	57	24	0	2	74	0.93
42536917--42536952	15	2.4	15	85	0	54	22	0	0	77	0.76
42537538--42537580	15	3.0	15	86	6	63	46	34	0	18	1.50
42537543--42537585	22	2.0	22	85	0	59	46	32	0	20	1.51
42538473--42538511	19	2.1	19	85	0	51	71	7	5	15	1.26
42538950--42539038	28	3.2	29	82	4	103	37	20	23	19	1.94
42539144--42539235	28	3.3	28	90	3	141	31	6	27	34	1.82
42543591--42543773	39	4.6	39	87	0	240	22	30	22	24	1.99
42551025--42551207	39	4.6	39	87	0	240	22	30	22	24	1.99
42554961--42554999	19	2.1	19	85	0	51	71	7	5	15	1.26
42555464--42555554	28	3.2	28	89	4	130	31	21	24	21	1.98
42555676--42555752	28	2.8	28	100	0	154	31	7	24	36	1.84
42556001--42556032	8	4.0	8	91	0	55	3	25	25	46	1.67
42557931--42557965	17	2.0	18	88	5	54	14	0	31	54	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42557907--42558019	54	2.1	54	86	3	156	20	0	30	49	1.49
42558059--42558138	40	2.0	40	82	2	97	27	21	15	36	1.93
42558074--42558164	41	2.2	41	88	1	130	24	18	16	40	1.90
42559502--42559548	20	2.3	21	85	10	71	57	2	0	40	1.11
42560026--42560050	13	1.9	13	100	0	50	32	4	24	40	1.73
42561140--42561291	43	3.5	42	77	5	108	25	19	24	30	1.98
42561182--42561299	43	2.8	42	78	8	132	22	17	27	32	1.97
42564613--42564785	46	3.7	46	77	9	138	23	27	19	29	1.98
42576216--42576647	27	16.0	27	80	3	321	40	18	9	31	1.83
42576593--42576667	27	2.8	27	79	4	80	40	17	12	30	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444