genome.fa.s10.2.7.7.80.10.50.1000.373.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  373  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108388811--108388853	19	2.2	20	87	4	61	46	4	18	30	1.69
108392955--108393002	25	1.9	25	82	0	60	56	2	6	35	1.36
108393063--108393159	48	2.0	48	86	6	133	54	3	6	36	1.41
108394350--108394395	18	2.6	18	82	0	56	0	17	6	76	1.00
108399396--108399452	23	2.5	23	88	0	78	22	22	15	38	1.92
108400573--108400608	14	2.6	14	86	13	56	38	0	0	61	0.96
108400587--108400649	24	2.5	24	82	10	65	41	0	3	55	1.16
108402405--108402435	9	3.6	9	95	4	55	74	0	0	25	0.82
108403975--108404000	5	5.2	5	100	0	52	80	0	0	19	0.71
108411060--108411102	18	2.5	17	85	14	54	46	0	6	46	1.30
108414507--108414539	5	6.4	5	93	6	57	60	0	0	39	0.97
108414507--108414536	11	2.8	11	95	5	53	63	0	0	36	0.95
108414509--108414539	16	1.9	16	100	0	62	61	0	0	38	0.96
108417779--108417850	30	2.4	30	77	13	76	51	4	1	43	1.29
108422978--108423020	22	1.9	24	86	13	65	4	60	2	32	1.30
108426176--108426217	12	3.5	12	81	18	52	50	0	7	42	1.30
108426675--108426752	38	2.1	36	83	9	95	52	0	3	43	1.19
108426679--108426755	30	2.5	30	79	14	86	51	0	5	42	1.24
108427390--108427439	24	2.1	24	96	3	93	54	0	0	46	1.00
108428560--108428643	38	2.2	38	89	0	123	46	5	11	35	1.65
108431494--108431547	27	2.0	27	100	0	108	11	14	18	55	1.68
108440743--108440786	20	2.2	20	88	4	63	34	6	4	54	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108452515--108452554	17	2.3	18	82	4	55	47	5	7	40	1.54
108453179--108453211	3	11.0	3	100	0	66	33	66	0	0	0.92
108460515--108460561	24	2.0	23	95	4	85	48	4	21	25	1.68
108464018--108464146	42	3.1	42	76	8	129	16	20	17	44	1.86
108467365--108467390	11	2.4	11	100	0	52	42	0	0	57	0.98
108467367--108467403	19	1.9	19	88	0	56	51	0	0	48	1.00
108469499--108469543	14	3.3	14	78	6	56	13	20	13	53	1.72
108472065--108472134	35	2.0	35	100	0	140	31	17	14	37	1.89
108473935--108474062	29	4.4	29	85	3	168	34	9	29	26	1.88
108473945--108474062	59	2.0	59	86	6	168	32	10	30	27	1.89
108474055--108474159	32	3.2	32	87	4	140	32	12	20	34	1.90
108474104--108474248	33	4.5	33	89	2	172	33	11	21	33	1.88
108474055--108474248	33	5.9	33	85	3	171	34	11	20	33	1.88
108477817--108477857	20	2.0	20	100	0	82	41	4	9	43	1.59
108481355--108481393	19	1.9	19	90	10	60	23	5	0	71	1.05
108483051--108483120	6	11.5	6	73	8	61	15	7	1	75	1.08
108483052--108483123	18	3.9	18	87	7	101	16	8	1	73	1.14
108487913--108487988	27	2.8	26	82	9	91	13	19	15	51	1.76
108487913--108487979	13	5.0	13	74	5	62	14	19	14	50	1.77
108489124--108489175	15	3.3	15	76	10	59	51	3	0	44	1.19
108489131--108489184	17	3.3	17	74	10	67	53	3	0	42	1.18
108489146--108489228	42	2.0	42	85	0	112	46	12	2	38	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108502345--108502369	4	6.2	4	100	0	50	76	0	24	0	0.80
108507994--108508045	15	3.6	14	77	10	52	25	3	1	69	1.16
108509958--108510086	63	2.0	64	83	1	161	20	17	24	37	1.93
108510566--108510611	23	2.0	23	84	12	60	45	10	6	36	1.65
108510573--108510617	23	2.0	23	82	8	56	40	13	8	37	1.76
108511203--108511331	54	2.4	54	98	0	249	35	24	16	24	1.95
108514011--108514124	51	2.3	49	92	4	192	42	11	8	36	1.72
108520186--108520263	23	3.2	24	75	13	70	30	21	23	24	1.99
108520210--108520279	23	2.9	24	78	6	79	37	18	21	22	1.94
108520179--108520289	47	2.3	49	77	10	120	32	22	19	25	1.98
108521796--108521903	26	4.2	26	93	0	189	32	7	24	36	1.83
108524963--108525013	13	3.9	13	75	10	59	35	23	7	33	1.84
108529573--108529622	19	2.5	20	77	12	57	44	0	2	54	1.11
108538405--108538443	5	7.8	5	100	0	78	58	0	0	41	0.98
108538997--108539043	17	2.8	16	81	12	58	34	0	0	65	0.93
108539396--108539451	18	3.1	18	74	5	51	41	3	0	55	1.17
108543408--108543452	22	2.0	23	91	4	74	62	2	0	35	1.08
108554034--108554297	101	2.6	101	94	0	447	31	15	23	29	1.95
108554034--108554291	51	5.1	51	86	1	367	31	15	23	29	1.95
108558289--108558319	16	1.9	16	93	0	53	48	9	6	35	1.62
108558486--108558520	18	2.0	18	88	5	54	37	0	8	54	1.31
108559767--108559814	14	3.4	14	85	5	69	54	0	12	33	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108559771--108559844	7	10.6	7	80	9	62	45	0	22	31	1.53
108564639--108564677	19	2.1	19	100	0	78	51	10	5	33	1.58
108565493--108565626	69	1.9	69	86	3	189	35	20	20	23	1.96
108569962--108570003	21	2.0	21	100	0	84	38	0	14	47	1.44
108571323--108571376	24	2.2	25	81	15	69	24	24	18	33	1.97
108575123--108575380	46	5.6	46	91	0	365	42	14	22	20	1.88
108575115--108575380	92	2.9	92	92	1	408	41	14	23	20	1.89
108579816--108579849	16	2.1	15	89	10	50	47	0	0	52	1.00
108582038--108582073	18	2.0	18	88	0	54	36	8	8	47	1.64
108588351--108588387	2	18.5	2	100	0	74	51	0	0	48	1.00
108590250--108590685	132	3.2	135	74	9	406	26	15	23	34	1.95
108590300--108591021	270	2.7	263	85	5	891	27	15	22	35	1.94
108590250--108591008	138	5.6	138	70	12	518	27	14	22	34	1.94
108592996--108593033	19	2.0	20	89	5	60	50	5	2	42	1.39
108594093--108594178	37	2.3	38	88	6	122	32	17	16	33	1.92
108594213--108594301	46	1.9	46	86	0	124	29	17	21	31	1.96
108595682--108595774	39	2.3	40	83	9	118	44	1	5	49	1.32
108596540--108596608	31	2.2	32	84	7	88	28	1	1	68	1.07
108598299--108598347	24	2.0	24	84	0	62	22	28	22	26	1.99
108599939--108599987	22	2.2	22	81	0	62	59	8	12	20	1.58
108600413--108600467	25	2.2	25	83	6	67	25	20	12	41	1.87
108601546--108601807	125	2.1	127	82	6	318	37	13	12	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108601826--108601877	25	2.0	26	85	3	70	67	1	9	21	1.29
108601970--108602456	3	161.3	3	69	14	139	60	3	7	27	1.41
108601970--108602026	23	2.4	23	80	13	71	68	0	5	26	1.11
108603211--108603816	132	4.6	132	83	4	717	26	23	20	29	1.99
108603196--108603816	263	2.4	263	87	3	856	25	24	20	29	1.99
108603728--108604077	177	2.0	178	86	1	497	26	21	20	32	1.98
108603879--108603978	44	2.2	45	85	1	130	29	19	22	30	1.97
108603325--108603934	132	4.6	133	85	3	571	25	22	20	30	1.98
108603909--108604001	44	2.1	44	81	0	105	26	24	20	27	1.99
108604407--108604517	46	2.4	46	80	0	141	22	23	18	36	1.95
108604888--108605009	65	1.9	65	81	3	147	50	9	18	22	1.76
108611852--108611878	14	1.9	14	100	0	54	3	22	44	29	1.70
108616474--108616519	19	2.4	19	85	7	58	47	10	19	21	1.80
108618427--108618477	23	2.3	22	76	6	57	64	0	5	29	1.17
108618507--108618777	3	90.0	3	66	18	66	61	3	7	27	1.38
108618538--108618591	21	2.5	22	87	3	74	61	0	11	27	1.30
108618538--108618659	15	7.7	16	70	14	74	62	2	9	26	1.38
108620309--108620334	13	2.0	13	100	0	52	38	30	7	23	1.83
108643819--108643848	10	3.0	10	100	0	60	60	0	30	10	1.30
108649313--108649342	14	2.1	14	93	0	51	46	36	0	16	1.47
108656221--108656249	2	14.5	2	100	0	58	51	0	0	48	1.00
108658760--108658824	29	2.2	29	80	0	76	27	18	6	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108662227--108662290	33	1.9	33	96	0	119	34	10	17	37	1.85
108675858--108675884	2	13.5	2	100	0	54	51	0	0	48	1.00
108677650--108677682	17	1.9	17	93	0	57	33	24	6	36	1.80
108677695--108677759	32	2.0	32	81	0	76	49	10	12	27	1.73
108684098--108684146	15	3.3	15	77	11	55	20	22	30	26	1.98
108689678--108689807	47	2.8	47	85	2	163	33	27	15	23	1.95
108694759--108694816	30	1.9	30	92	0	98	24	5	13	56	1.57
108697791--108697876	45	1.9	45	85	4	120	44	12	19	23	1.85
108697935--108698147	74	2.9	74	86	0	291	33	16	23	27	1.96
108698181--108698251	27	2.6	27	79	0	88	46	18	15	19	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444