genome.fa.s10.2.7.7.80.10.50.1000.359.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  359  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104285906--104285966	30	2.0	30	83	0	77	31	22	8	37	1.84
104291363--104291508	40	3.6	40	83	0	175	34	23	16	25	1.95
104298220--104298336	31	3.5	35	90	8	142	21	23	17	37	1.94
104298243--104298336	31	3.1	31	98	1	181	22	22	15	39	1.92
104298528--104298669	47	3.0	47	89	6	198	26	22	21	28	1.99
104298528--104298669	24	6.0	24	90	4	200	26	22	21	28	1.99
104298720--104298779	20	3.0	20	90	0	102	33	20	11	35	1.88
104298822--104298869	25	1.9	25	86	0	69	25	16	25	33	1.96
104300107--104300451	27	12.9	27	85	4	385	41	7	22	28	1.81
104300106--104300451	81	4.3	81	85	3	439	41	7	21	29	1.81
104300375--104300652	27	10.3	27	83	2	204	33	8	20	37	1.84
104300163--104300577	81	5.2	80	81	6	245	37	8	21	32	1.83
104300529--104300669	27	5.3	26	84	2	138	31	7	18	42	1.77
104303357--104303473	31	3.5	35	90	8	142	21	23	17	37	1.94
104303380--104303473	31	3.1	31	98	1	181	22	22	15	39	1.92
104303665--104303807	24	6.0	24	91	4	209	26	22	22	28	1.99
104303665--104303806	47	3.0	48	90	5	207	26	22	22	28	1.99
104303664--104303807	71	2.0	72	89	4	220	26	22	22	29	1.99
104303858--104303917	20	3.0	20	90	0	102	33	20	11	35	1.88
104303960--104304007	25	1.9	25	86	0	69	25	16	25	33	1.96
104306415--104306492	29	2.7	29	83	0	102	26	17	33	21	1.96
104314246--104314323	29	2.7	29	83	0	102	26	17	33	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104316096--104316441	27	12.8	27	87	3	401	40	7	22	29	1.82
104316365--104316669	27	11.3	27	84	2	233	32	8	20	38	1.83
104316519--104316686	27	6.3	26	87	2	174	31	7	19	42	1.78
104318787--104318816	16	1.9	16	93	6	53	50	0	13	36	1.42
104320440--104320551	44	2.6	44	83	5	131	31	28	16	24	1.96
104328048--104328109	31	2.0	31	87	6	90	35	14	19	30	1.92
104332078--104332118	2	20.0	2	95	5	73	48	0	2	48	1.14
104332680--104332755	29	2.6	29	85	8	100	26	17	31	25	1.97
104332680--104332754	30	2.5	30	87	6	100	26	17	30	25	1.97
104358458--104358495	20	1.9	20	88	0	58	34	2	10	52	1.50
104360122--104360190	28	2.5	28	95	2	122	43	27	10	18	1.82
104366421--104366458	20	1.9	20	88	0	58	34	2	10	52	1.50
104368084--104368152	28	2.5	28	95	2	122	43	27	10	18	1.82
104375883--104375983	28	3.5	28	86	6	114	29	13	26	29	1.94
104383829--104383929	28	3.5	28	86	6	114	29	13	26	29	1.94
104389786--104390070	43	6.6	43	87	1	401	29	26	18	25	1.98
104400896--104401091	50	3.9	50	82	3	207	27	28	18	25	1.98
104400909--104401095	101	1.9	99	86	2	266	27	28	18	25	1.98
104403217--104403280	14	4.4	15	77	16	64	64	14	12	9	1.50
104403247--104403284	14	2.6	14	87	4	58	63	21	7	7	1.47
104403217--104403284	29	2.3	31	80	16	83	61	17	11	8	1.54
104406259--104406450	49	3.9	48	77	6	172	28	27	19	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104406270--104406452	99	1.8	99	82	4	235	28	27	18	25	1.98
104409436--104409701	49	5.6	49	71	12	162	29	19	28	22	1.98
104414571--104414668	28	3.5	28	84	4	108	29	16	24	29	1.96
104422164--104422261	28	3.5	28	84	4	108	29	16	23	30	1.96
104436434--104436491	30	1.9	31	86	6	84	36	10	24	29	1.88
104436844--104437099	94	2.7	94	80	10	263	28	19	28	23	1.98
104438338--104438557	46	5.0	46	84	9	278	21	24	15	39	1.92
104438470--104438545	38	2.0	38	100	0	152	21	26	18	34	1.96
104440636--104440687	11	4.7	11	76	9	52	63	3	0	32	1.12
104442773--104442991	46	5.0	46	84	9	269	21	24	15	38	1.92
104442905--104442980	38	2.0	38	100	0	152	21	26	18	34	1.96
104445119--104445170	11	4.7	11	76	9	52	63	3	0	32	1.12
104453514--104453557	20	2.2	20	100	0	88	43	9	15	31	1.79
104456056--104456098	19	2.3	18	81	14	52	18	6	13	60	1.55
104470960--104471005	13	3.7	12	88	8	65	17	2	2	78	0.96
104472304--104472382	30	2.6	31	86	4	108	21	25	22	30	1.99
104472595--104472653	25	2.4	23	86	10	82	25	22	22	30	1.99
104472700--104472748	11	4.7	11	75	12	50	30	20	12	36	1.89
104475177--104475392	40	5.5	40	90	5	325	23	22	28	25	1.99
104483203--104483379	40	4.4	40	90	3	261	23	22	27	27	1.99
104488371--104488447	31	2.5	31	87	4	113	23	24	20	31	1.98
104488661--104488718	25	2.4	24	88	8	82	29	22	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104488766--104488814	11	4.7	11	75	12	50	30	20	12	36	1.89
104488851--104488898	25	1.9	25	86	0	69	29	16	22	31	1.96
104491156--104491180	12	2.1	12	100	0	50	52	8	0	40	1.31
104493646--104493880	39	6.0	39	95	0	380	26	20	31	20	1.97
104493648--104493919	39	6.9	39	92	0	283	25	21	31	21	1.98
104500926--104500998	29	2.5	29	90	0	92	24	31	16	27	1.96
104508809--104508881	29	2.5	29	88	4	85	26	30	16	27	1.97
104510052--104510107	24	2.3	24	84	9	69	7	16	1	75	1.11
104511900--104511961	31	2.0	31	90	6	99	35	14	20	29	1.93
104519824--104520037	46	4.6	46	77	11	188	26	19	30	23	1.98
104519867--104520088	46	4.8	46	75	11	134	27	18	30	23	1.97
104525978--104526089	40	2.8	40	86	2	163	32	22	20	25	1.98
104526900--104526929	2	15.0	2	100	0	60	50	50	0	0	1.00
104538873--104539025	39	3.9	39	89	0	216	24	21	30	23	1.99
104542739--104542812	29	2.6	29	93	0	103	25	31	16	27	1.96
104549888--104549914	2	13.5	2	100	0	54	51	0	0	48	1.00
104550007--104550080	29	2.6	29	93	0	103	25	31	16	27	1.96
104551871--104551900	16	1.9	15	93	6	51	46	23	26	3	1.68
104552310--104552386	27	2.8	27	84	9	102	15	24	23	36	1.94
104553117--104553145	13	2.2	13	100	0	58	24	17	24	34	1.96
104554641--104554809	45	3.7	45	77	15	193	20	20	29	29	1.98
104562070--104562245	46	3.8	46	76	12	180	22	20	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104562067--104562237	93	1.8	93	92	0	288	22	21	28	28	1.99
104563706--104563824	38	3.1	38	91	0	184	21	22	24	31	1.99
104563706--104563846	38	3.7	38	86	5	149	21	21	24	31	1.98
104568063--104568112	18	2.8	17	76	8	55	16	22	28	34	1.95
104570573--104570644	20	3.6	20	78	10	76	38	16	8	36	1.79
104570813--104570925	23	4.9	23	81	9	133	34	19	22	23	1.96
104570811--104570925	45	2.5	46	86	8	164	33	19	22	24	1.97
104572799--104572830	2	16.0	2	100	0	64	50	0	0	50	1.00
104584573--104584641	28	2.5	28	95	2	122	18	10	27	43	1.82
104585262--104585323	27	2.3	27	94	0	106	27	14	16	41	1.87
104585279--104585429	54	2.8	54	85	2	178	29	8	19	42	1.81
104585277--104585429	81	1.9	81	86	5	220	30	8	18	41	1.81
104585306--104585429	27	4.6	27	83	2	160	30	7	19	42	1.78
104585413--104585483	27	2.6	27	75	4	72	29	7	26	36	1.83
104585306--104585429	54	2.3	54	91	0	194	30	7	19	42	1.78
104589324--104589442	24	5.0	24	87	5	170	27	21	21	29	1.98
104589500--104589556	9	5.9	9	73	15	51	35	21	8	35	1.84
104589488--104589558	20	3.5	20	94	0	124	32	21	11	35	1.89
104589493--104589547	11	5.4	11	70	16	55	30	20	12	36	1.90
104599930--104600008	26	3.0	25	88	3	77	24	24	20	31	1.98
104599948--104600008	26	2.3	26	100	0	104	24	24	18	32	1.97
104600606--104600657	27	2.0	26	84	3	68	17	26	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104603140--104603306	40	4.2	40	81	2	167	23	26	22	26	2.00
104603156--104603306	80	1.9	79	83	6	198	23	27	23	26	2.00
104611120--104611286	40	4.2	40	81	2	167	23	26	22	26	2.00
104611136--104611286	80	1.9	79	83	6	198	23	27	23	26	2.00
104613401--104613446	2	23.0	2	100	0	92	50	0	0	50	1.00
104613443--104613502	27	2.3	26	85	2	75	21	23	20	35	1.96
104635740--104635777	18	2.1	19	90	5	60	23	0	26	50	1.50
104638315--104638383	33	2.1	33	100	0	138	53	2	20	23	1.59
104639726--104639863	40	3.5	40	86	3	163	24	23	27	23	2.00
104659433--104659475	21	2.0	21	86	9	59	25	0	18	55	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444