genome.fa.s10.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  174  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48211122--48211243	21	5.8	21	80	9	106	24	0	38	36	1.56
48211122--48211245	7	17.6	7	76	7	63	25	0	37	37	1.56
48211221--48211322	43	2.3	43	84	1	141	21	1	31	45	1.63
48211290--48211323	15	2.3	15	89	0	50	14	0	38	47	1.45
48220477--48220582	48	2.2	47	80	12	119	17	25	19	36	1.94
48220525--48220636	24	4.7	24	68	12	77	19	23	22	34	1.96
48221614--48221657	21	2.1	21	87	8	63	45	18	11	25	1.82
48225925--48225953	14	2.0	15	93	6	51	37	0	0	62	0.96
48226649--48226691	23	1.9	23	95	4	79	65	2	0	32	1.06
48226707--48226741	19	1.9	18	88	11	54	57	2	0	40	1.14
48226765--48226830	14	4.3	15	73	19	55	45	0	1	53	1.09
48226869--48226928	22	2.8	22	85	5	70	50	0	0	50	1.00
48227382--48227428	23	2.0	24	87	4	69	29	21	29	19	1.97
48231467--48231512	12	3.8	12	78	16	51	43	0	0	56	0.99
48231490--48231544	22	2.6	20	74	20	58	52	1	0	45	1.11
48232380--48232413	13	2.6	13	85	0	50	32	29	26	11	1.92
48233248--48233467	47	4.7	48	72	12	129	24	29	18	28	1.98
48234615--48234657	21	2.0	21	100	0	86	53	4	0	41	1.21
48237857--48238096	65	3.9	61	77	11	204	29	16	30	24	1.96
48239170--48239200	2	15.5	2	100	0	62	48	0	0	51	1.00
48243289--48243442	74	2.1	74	93	0	263	24	28	25	22	1.99
48244958--48245215	50	5.2	50	78	6	263	29	25	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48246578--48246744	40	4.2	40	81	2	176	24	27	22	25	2.00
48246594--48246744	80	1.9	79	83	6	198	23	27	22	25	2.00
48254688--48254817	40	3.2	40	84	4	174	23	29	24	22	1.99
48262370--48262499	40	3.2	40	75	4	120	24	23	26	25	2.00
48269372--48269414	10	3.9	11	87	6	52	34	6	0	58	1.25
48269953--48269992	21	1.9	21	100	0	80	35	10	20	35	1.86
48287690--48287773	24	3.5	24	96	0	159	36	25	16	21	1.94
48296741--48296766	3	8.7	3	100	0	52	30	0	0	69	0.89
48302576--48302641	32	2.1	32	100	0	132	31	9	21	37	1.85
48303610--48303654	19	2.3	19	96	3	81	40	11	6	42	1.67
48311032--48311101	27	2.5	28	93	2	115	27	14	28	30	1.95
48311032--48311113	27	3.0	27	84	8	69	28	15	25	30	1.96
48313904--48314075	93	1.8	93	94	0	308	28	29	20	20	1.98
48313897--48314072	46	3.8	46	79	12	207	29	29	20	20	1.98
48313946--48314084	47	3.0	46	75	16	144	29	28	19	22	1.98
48327183--48327333	73	2.1	73	100	0	302	33	14	10	41	1.80
48334063--48334156	47	2.0	47	100	0	188	38	27	6	27	1.81
48347534--48347721	100	1.9	100	92	0	313	27	20	24	28	1.99
48347431--48347724	49	5.9	50	79	4	297	26	19	26	27	1.99
48350790--48351012	53	4.2	53	76	5	198	39	18	23	18	1.92
48356384--48356431	22	2.2	22	92	0	78	22	12	37	27	1.90
48356390--48356434	22	2.0	22	100	0	90	17	13	35	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48358788--48358855	30	2.2	30	89	7	102	57	11	4	26	1.53
48359418--48359640	53	4.2	54	76	5	184	40	17	22	19	1.91
48382140--48382331	39	4.9	40	81	5	146	28	28	21	21	1.99
48382210--48382335	39	3.2	39	93	0	198	27	29	20	22	1.98
48391086--48391220	49	2.7	51	81	2	175	30	25	18	25	1.98
48392826--48393042	46	4.6	47	74	12	178	27	18	31	22	1.97
48395783--48395959	40	4.5	40	87	2	234	24	29	23	22	1.99
48401671--48401756	43	2.0	43	100	0	172	32	20	16	30	1.95
48403200--48403349	21	7.1	21	70	3	104	44	17	22	16	1.87
48403200--48403354	42	3.7	42	84	3	195	44	16	22	16	1.86
48406701--48406741	21	2.0	21	85	0	55	48	4	17	29	1.67
48412750--48412816	27	2.4	28	92	2	109	26	13	28	31	1.94
48412771--48412828	27	2.1	27	81	6	64	29	15	24	31	1.95
48417456--48417554	28	3.5	29	93	5	159	27	12	28	32	1.92
48420360--48420429	27	2.5	28	90	2	106	28	28	15	27	1.96
48424809--48425015	40	5.2	39	84	2	218	25	26	22	25	2.00
48424809--48425013	79	2.6	80	84	3	245	25	26	22	25	2.00
48432865--48433072	40	5.2	39	84	1	218	25	25	22	25	2.00
48432865--48433070	80	2.6	81	84	3	247	25	26	22	25	2.00
48439574--48439643	27	2.6	27	93	2	113	30	28	14	27	1.95
48447476--48447574	28	3.5	29	93	5	159	27	12	28	32	1.92
48453314--48453414	31	3.2	31	79	13	100	39	1	2	55	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48455183--48455223	21	2.0	21	90	4	66	46	0	2	51	1.14
48457586--48457619	17	2.0	17	88	11	52	29	0	0	70	0.87
48457665--48457696	2	16.0	2	100	0	64	50	0	0	50	1.00
48457796--48457852	20	2.8	20	74	10	53	63	1	0	35	1.05
48457816--48457856	21	2.0	20	90	4	64	56	2	0	41	1.13
48458497--48458538	3	14.0	3	100	0	84	66	0	0	33	0.92
48462155--48462192	19	2.0	19	89	0	58	42	0	2	55	1.14
48464347--48464393	23	2.0	23	84	15	62	63	4	2	29	1.25
48468906--48468940	18	2.0	17	94	5	61	25	0	0	74	0.82
48469173--48469206	2	17.5	2	93	6	61	50	0	0	50	1.00
48472932--48473001	17	4.2	17	72	17	58	44	1	2	51	1.25
48472943--48473000	17	3.5	17	75	13	59	46	1	3	48	1.29
48473819--48473857	19	2.1	19	85	9	53	38	5	5	51	1.46
48475214--48475253	21	1.9	21	84	0	53	35	2	15	47	1.58
48476191--48476245	21	2.5	22	80	13	69	67	7	5	20	1.35
48476194--48476239	19	2.2	20	85	11	58	67	8	6	17	1.39
48476409--48476447	8	4.8	8	81	6	51	74	0	2	23	0.94
48476409--48476445	17	2.1	17	90	5	56	75	0	2	21	0.92
48484897--48485114	40	5.5	40	92	2	334	25	27	22	24	2.00
48487720--48488209	131	3.7	130	77	4	421	37	13	14	34	1.85
48487822--48488246	131	3.2	130	80	3	458	37	13	15	33	1.87
48491125--48491279	42	3.7	43	80	13	171	25	25	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48491097--48491282	86	2.2	85	82	11	213	26	24	19	29	1.99
48494641--48494720	29	2.7	29	86	5	108	27	32	15	25	1.95
48500424--48500630	40	5.2	40	90	2	312	25	22	26	25	2.00
48503688--48504313	48	13.0	48	92	0	1009	36	6	26	31	1.82
48504454--48504556	37	2.8	37	93	0	170	22	19	33	25	1.97
48516759--48516860	27	3.9	26	77	16	88	35	10	25	28	1.90
48516747--48516859	51	2.1	54	85	7	153	37	12	25	24	1.91
48520613--48520794	39	4.6	39	86	2	231	24	22	30	22	1.99
48532690--48532848	43	3.7	44	74	10	150	25	15	27	31	1.96
48543721--48543877	40	3.9	40	85	4	199	25	25	22	26	2.00
48543661--48543872	80	2.7	80	80	3	232	25	25	22	25	2.00
48545919--48545957	14	2.8	14	100	0	78	10	15	5	69	1.34
48551676--48551856	46	3.9	46	81	9	233	20	21	29	27	1.98
48551678--48551848	93	1.8	93	96	0	315	20	22	29	27	1.98
48554771--48554850	15	5.4	15	77	7	83	10	18	13	57	1.64
48554762--48554849	30	3.0	30	80	11	92	10	18	15	55	1.68
48558224--48558363	40	3.6	39	77	8	149	25	28	20	25	1.99
48566068--48566239	93	1.8	93	96	0	317	27	30	22	20	1.98
48566060--48566235	46	3.8	46	81	10	232	28	29	21	20	1.98
48568619--48568706	29	3.0	29	80	8	97	56	15	17	10	1.66
48568619--48568697	15	5.4	15	77	10	83	58	13	17	10	1.63
48568630--48568706	15	5.2	15	75	9	77	55	15	16	11	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48571653--48571824	93	1.8	93	96	0	317	27	30	22	20	1.98
48571645--48571820	46	3.8	46	81	10	232	28	29	21	20	1.98
48575585--48575674	32	2.8	32	83	3	110	26	25	17	30	1.98
48582876--48583043	40	4.2	40	79	4	160	25	25	22	26	2.00
48582892--48583043	80	1.9	80	83	5	200	24	25	23	26	2.00
48593005--48593104	39	2.6	38	82	1	110	35	6	7	52	1.53
48598851--48598910	29	2.1	29	90	3	95	18	13	23	45	1.84
48598841--48598910	28	2.5	28	86	4	97	20	11	25	42	1.85
48603131--48603198	28	2.5	28	92	4	113	19	10	27	42	1.83
48607415--48607482	28	2.5	28	92	4	113	19	10	27	42	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444