genome.fa.s10.2.7.7.80.10.50.1000.363.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  363  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105611215--105611333	47	2.5	48	87	8	163	26	24	21	28	1.99
105611382--105611441	20	3.0	20	90	0	102	31	20	11	36	1.88
105619395--105619482	44	2.0	44	100	0	176	22	25	15	36	1.94
105627649--105627873	47	4.8	48	77	12	211	22	29	17	30	1.97
105627695--105627915	46	4.7	43	75	16	135	22	28	18	30	1.97
105627788--105627915	47	2.7	46	79	4	148	22	28	17	31	1.96
105627653--105627910	140	1.8	140	81	4	324	22	28	17	31	1.97
105629943--105629976	18	1.9	17	94	5	59	8	17	8	64	1.47
105631186--105631262	9	7.9	9	72	16	64	35	9	20	35	1.85
105631195--105631266	11	7.1	11	70	17	66	36	12	19	31	1.89
105631184--105631266	20	4.2	20	96	0	157	36	12	19	32	1.88
105631320--105631413	23	3.9	24	86	12	131	29	21	22	26	1.99
105631607--105631667	31	2.0	31	93	0	104	32	16	26	24	1.96
105635830--105635887	27	2.1	27	90	0	89	31	15	18	34	1.93
105637080--105637155	28	2.6	29	83	4	91	39	22	13	25	1.90
105654775--105654834	30	2.0	30	96	0	111	51	20	5	23	1.66
105661199--105661231	12	2.6	13	85	9	50	9	45	0	45	1.35
105662298--105662362	28	2.3	28	86	0	94	32	26	9	32	1.88
105662468--105662557	28	3.2	27	81	7	101	20	24	23	32	1.98
105662468--105662557	27	3.2	28	79	7	103	20	24	23	32	1.98
105662478--105662568	27	3.2	28	79	4	85	21	26	19	31	1.98
105662468--105662582	55	2.1	56	80	8	128	19	24	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105668548--105668817	144	1.9	144	85	1	371	25	25	19	29	1.99
105668548--105668817	48	5.6	48	85	1	317	25	25	19	29	1.99
105673417--105673613	53	3.6	54	76	4	164	22	23	16	37	1.93
105681217--105681255	20	1.9	20	84	5	51	38	5	23	33	1.77
105700277--105700311	11	3.1	11	84	8	52	11	8	0	80	0.92
105700271--105700311	12	3.5	12	83	6	57	9	9	0	80	0.91
105700268--105700308	17	2.4	17	87	0	55	9	9	0	80	0.91
105700271--105700333	29	2.1	31	85	5	85	11	11	1	76	1.10
105702422--105702535	40	2.8	40	80	6	122	23	22	27	26	2.00
105715343--105715429	30	2.9	30	84	0	111	10	29	34	25	1.89
105718737--105718761	8	3.1	8	100	0	50	76	0	0	24	0.80
105718734--105718802	29	2.3	31	80	9	81	60	4	0	34	1.16
105720889--105720929	2	20.5	2	100	0	82	48	0	0	51	1.00
105721395--105721444	26	1.9	26	83	0	64	40	22	2	36	1.65
105721375--105721444	13	5.3	13	68	1	50	37	24	2	35	1.70
105721532--105721639	46	2.3	47	85	1	137	16	23	17	42	1.88
105724152--105724748	48	12.3	48	92	2	960	37	6	25	30	1.82
105724152--105724748	194	3.1	194	95	0	1050	37	6	25	30	1.82
105724152--105724748	146	4.1	144	91	1	960	37	6	25	30	1.82
105725780--105725898	46	2.6	46	91	2	186	21	24	11	42	1.86
105725817--105725982	45	3.7	45	85	0	161	21	24	18	36	1.95
105725998--105726153	33	4.7	34	70	10	90	25	25	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105726342--105726434	45	2.1	45	100	0	186	41	13	12	31	1.83
105728925--105728949	8	3.1	8	100	0	50	76	0	0	24	0.80
105728927--105728990	29	2.1	31	83	11	80	60	3	0	35	1.12
105729203--105729270	30	2.3	30	82	5	75	27	19	5	47	1.72
105730029--105730081	11	4.8	11	77	6	54	75	1	5	16	1.08
105738346--105738392	23	2.0	23	83	0	58	23	31	8	36	1.85
105770960--105771147	94	2.0	94	97	0	358	41	14	13	29	1.85
105771641--105771671	2	15.5	2	100	0	62	51	0	0	48	1.00
105776938--105777110	93	1.9	93	92	0	292	27	30	20	20	1.98
105776931--105777100	46	3.7	45	76	13	184	28	30	20	20	1.97
105776982--105777125	46	3.1	46	71	14	125	29	28	19	22	1.98
105780366--105780407	21	2.0	21	90	0	66	52	23	7	16	1.68
105785669--105785741	27	2.7	27	80	4	85	26	26	12	35	1.91
105789122--105789247	46	2.8	45	87	4	164	26	19	30	23	1.98
105790990--105791157	40	4.2	39	78	6	160	25	23	26	23	2.00
105792823--105792886	32	2.0	32	100	0	128	34	15	21	28	1.94
105795900--105796117	46	4.7	46	80	8	219	27	21	27	23	1.99
105795900--105796202	92	3.2	92	78	12	282	27	20	27	24	1.99
105795984--105796210	96	2.4	95	82	8	268	25	20	29	24	1.99
105805821--105805855	9	3.9	9	88	0	52	2	5	2	88	0.68
105806000--105806212	118	1.8	118	96	0	399	28	30	17	23	1.97
105807092--105807144	20	2.7	20	91	2	81	81	0	3	15	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105809351--105809448	49	2.0	50	89	2	153	29	7	9	54	1.59
105811892--105811923	11	2.8	12	86	13	50	34	0	0	65	0.93
105812044--105812106	30	2.1	30	96	0	117	57	12	3	26	1.51
105812991--105813031	21	2.0	21	90	4	66	36	29	24	9	1.87
105829984--105830107	43	2.9	43	77	7	135	32	24	15	28	1.95
105831839--105831881	21	2.1	20	83	12	52	18	0	44	37	1.50
105833351--105833559	27	7.7	27	88	1	276	31	16	17	34	1.92
105833546--105833613	27	2.5	27	85	0	91	36	17	25	20	1.94
105834986--105835110	29	4.3	29	91	1	189	28	32	15	24	1.95
105839539--105839572	11	2.8	12	86	13	52	0	23	0	76	0.79
105846200--105846239	12	3.3	12	86	10	55	0	22	2	75	0.93
105846305--105846338	2	17.0	2	100	0	68	50	0	0	50	1.00
105846343--105846391	3	16.7	3	79	12	57	59	2	0	38	1.09
105846347--105846391	16	2.8	16	86	3	63	60	2	0	37	1.09
105846343--105846392	13	3.6	14	80	20	61	58	2	0	40	1.10
105846509--105846561	21	2.3	23	75	21	58	52	3	0	43	1.19
105847004--105847045	11	3.8	11	81	9	50	45	21	0	33	1.52
105848280--105848446	43	3.9	43	88	1	210	34	26	16	22	1.95
105852191--105852272	33	2.5	33	93	0	137	21	25	24	28	1.99
105853005--105853073	29	2.4	29	90	2	104	26	33	14	26	1.94
105853904--105854021	31	3.5	35	89	9	135	22	23	16	37	1.94
105853927--105854021	31	3.1	31	98	0	181	23	22	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105854146--105854312	24	7.0	24	93	3	257	25	22	23	28	1.99
105854145--105854312	71	2.3	71	90	4	257	25	22	23	29	1.99
105854363--105854442	20	4.0	20	96	0	142	32	20	10	37	1.85
105854363--105854437	11	7.4	11	68	17	63	30	20	10	38	1.86
105856325--105856377	16	3.3	16	81	0	61	13	20	20	45	1.84
105859856--105859923	29	2.4	28	92	7	118	30	27	14	26	1.95
105860166--105860203	16	2.4	16	90	0	58	7	23	18	50	1.73
105860173--105860211	16	2.4	16	95	0	69	10	25	20	43	1.83
105860173--105860211	8	4.9	8	83	0	51	10	25	20	43	1.83
105868177--105868350	48	3.6	48	88	0	251	27	18	27	27	1.99
105870077--105870114	14	2.9	13	81	11	51	57	10	13	18	1.63
105873931--105874079	43	3.4	43	75	7	167	26	19	24	29	1.98
105873929--105874091	87	1.9	87	94	0	290	25	19	24	30	1.98
105873931--105874098	43	3.9	44	71	16	129	25	19	23	31	1.98
105873945--105874132	87	2.2	87	86	1	245	26	19	23	30	1.98
105884505--105884531	5	5.4	5	100	0	54	18	18	18	44	1.87
105886265--105886302	14	2.9	13	81	11	51	57	10	13	18	1.63
105887171--105887233	25	2.6	24	80	14	67	39	11	6	42	1.66
105888955--105888986	8	4.0	8	91	0	55	46	25	25	3	1.67
105889233--105889325	28	3.3	28	93	0	150	36	25	7	30	1.84
105889430--105889519	28	3.2	27	85	7	119	20	24	23	32	1.98
105889430--105889544	55	2.1	55	81	14	130	20	25	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105891156--105891304	77	1.9	80	84	4	205	23	26	22	27	2.00
105891124--105891262	40	3.6	38	83	7	147	23	28	23	25	2.00
105891156--105891302	40	3.8	40	79	9	151	23	26	23	27	2.00
105898464--105898606	40	3.6	40	83	0	160	24	27	22	25	2.00
105900619--105900659	18	2.3	18	86	0	55	24	2	4	68	1.22
105904631--105904677	23	2.0	24	88	12	71	46	2	21	29	1.63
105904879--105904948	35	2.0	35	100	0	140	31	14	17	37	1.89
105905278--105905310	2	16.5	2	100	0	66	51	0	0	48	1.00
105906329--105906388	30	2.0	30	93	0	102	40	8	23	28	1.83
105911939--105911975	3	12.7	3	94	5	67	70	0	0	29	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444