genome.fa.s10.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  156  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42576903--42576980	41	1.9	41	83	0	102	23	17	29	29	1.97
42577127--42577191	22	3.0	22	80	8	78	21	24	21	32	1.98
42582859--42582927	28	2.5	28	95	2	122	18	10	27	43	1.82
42584554--42584591	20	1.9	20	88	0	58	52	10	2	34	1.50
42590846--42590914	28	2.5	28	95	2	122	18	10	27	43	1.82
42592541--42592578	20	1.9	20	88	0	58	52	10	2	34	1.50
42610314--42610434	52	2.4	50	80	2	125	27	14	25	32	1.95
42610472--42610596	51	2.5	51	84	5	155	26	16	29	28	1.96
42615972--42616010	2	19.5	2	100	0	78	51	0	0	48	1.00
42619586--42619710	50	2.5	51	84	1	153	24	18	28	29	1.98
42621474--42621640	40	4.2	41	80	5	164	24	26	22	26	2.00
42622466--42622511	17	2.5	19	74	22	53	34	23	17	23	1.96
42629746--42629780	13	2.7	13	86	0	52	25	48	22	2	1.64
42630757--42630902	42	3.5	41	77	9	152	30	21	15	32	1.94
42630757--42630919	42	3.9	41	77	10	125	30	22	14	33	1.93
42630757--42630911	84	1.8	84	82	8	199	30	22	14	32	1.93
42638195--42638302	43	2.5	42	77	2	117	29	24	16	29	1.97
42638276--42638332	30	1.9	30	92	0	96	26	19	19	35	1.95
42640353--42640476	27	4.6	27	81	8	119	38	23	9	28	1.86
42640374--42640507	27	5.0	26	78	10	135	38	22	10	29	1.87
42640353--42640507	81	1.9	80	80	6	179	38	23	10	27	1.87
42640353--42640522	54	3.2	54	78	7	184	40	21	10	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42640499--42641044	27	20.2	27	85	3	668	30	20	8	41	1.81
42641579--42641672	12	7.7	12	70	13	57	19	19	12	48	1.80
42641604--42641672	6	11.3	6	73	14	61	17	17	14	50	1.78
42641585--42641646	19	3.7	18	70	28	55	19	20	12	46	1.83
42641579--42641651	31	2.4	31	90	0	119	19	20	12	47	1.81
42643650--42643775	27	4.7	27	75	14	91	38	21	10	30	1.87
42643726--42643789	27	2.4	27	81	5	76	40	17	10	31	1.84
42643796--42644286	27	18.2	27	87	1	599	29	21	8	40	1.83
42644790--42644893	31	3.4	31	82	7	122	21	19	11	48	1.80
42644819--42644905	6	14.2	6	71	13	61	20	20	11	47	1.81
42648551--42648585	16	2.2	16	100	0	70	37	25	20	17	1.94
42648936--42649155	40	5.6	40	90	2	329	26	30	20	22	1.99
42652851--42652952	29	3.5	29	97	0	186	28	30	14	26	1.95
42652821--42652952	58	2.3	58	87	0	165	25	31	15	28	1.95
42660066--42660163	29	3.5	29	93	5	159	26	31	15	26	1.96
42664903--42665086	40	4.7	40	84	8	243	24	21	27	26	1.99
42664903--42665084	78	2.3	80	85	6	246	24	21	27	25	2.00
42666959--42667134	46	3.8	46	79	12	216	20	21	29	28	1.98
42666956--42667127	93	1.8	93	96	0	317	20	21	29	27	1.98
42674498--42674673	46	3.8	46	79	12	216	20	21	29	28	1.98
42674495--42674666	93	1.8	93	96	0	317	20	21	29	27	1.98
42677135--42677260	39	3.2	39	88	0	180	23	19	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42677135--42677278	39	3.7	39	85	1	128	22	20	29	27	1.99
42678098--42678125	2	14.0	2	100	0	56	50	0	0	50	1.00
42682390--42682433	22	2.0	22	86	0	61	54	6	0	38	1.27
42685792--42685850	28	2.1	28	96	0	109	28	27	10	33	1.89
42688086--42688110	13	1.9	13	100	0	50	20	24	32	24	1.98
42689476--42689584	42	2.6	42	91	0	164	30	30	21	18	1.97
42696538--42696711	40	4.4	39	85	5	190	24	27	21	25	1.99
42696571--42696718	40	3.7	40	87	5	219	25	27	22	25	2.00
42696571--42696718	79	1.9	80	87	4	219	25	27	22	25	2.00
42703647--42703676	14	2.1	14	100	0	60	50	6	13	30	1.67
42710418--42710545	63	2.0	63	96	0	238	36	13	12	37	1.82
42714739--42714790	26	2.0	26	100	0	104	42	15	3	38	1.65
42719867--42720163	41	7.3	41	89	1	447	35	20	24	19	1.96
42719875--42720163	121	2.4	122	89	2	429	35	20	23	20	1.96
42720210--42720287	40	2.0	39	85	5	104	48	29	2	19	1.62
42721146--42721176	6	5.2	6	92	0	53	0	51	0	48	1.00
42721335--42721360	2	13.0	2	100	0	52	50	0	0	50	1.00
42721831--42721897	7	9.6	7	100	0	134	59	0	13	26	1.34
42721880--42721936	22	2.5	22	86	8	71	66	3	3	26	1.24
42721986--42722019	17	2.1	17	88	5	52	70	2	0	26	1.01
42722083--42722207	41	3.1	41	84	3	155	39	12	21	26	1.89
42727043--42727087	19	2.4	19	85	3	56	26	0	4	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42728859--42729182	48	6.7	47	75	9	280	26	18	30	24	1.98
42728861--42729182	96	3.3	95	77	9	312	26	18	30	24	1.98
42731205--42731335	30	4.5	30	86	8	171	28	25	13	32	1.94
42731204--42731335	58	2.3	58	85	4	176	28	26	13	31	1.94
42739146--42739276	30	4.5	30	86	8	171	28	25	13	32	1.94
42739145--42739276	58	2.3	58	85	4	176	28	26	13	31	1.94
42742384--42742570	40	4.7	40	90	2	288	25	26	23	24	2.00
42750670--42750818	40	3.7	40	90	3	246	24	26	22	26	2.00
42759349--42759471	46	2.7	46	85	2	167	29	17	28	24	1.98
42759352--42759518	46	3.6	45	78	13	164	29	17	28	23	1.97
42759443--42759661	48	4.6	48	87	4	279	26	17	30	25	1.97
42764697--42764879	40	4.6	40	84	8	205	24	26	22	25	2.00
42764694--42764879	80	2.3	82	82	10	233	25	26	22	25	2.00
42773536--42773748	40	5.2	40	86	3	300	22	28	24	24	2.00
42781662--42781871	40	5.2	40	88	2	305	21	28	24	25	1.99
42789799--42790008	40	5.2	40	88	2	305	21	28	24	25	1.99
42796478--42796630	78	1.9	80	85	5	213	27	28	18	25	1.98
42796450--42796633	40	4.7	40	82	8	225	27	27	20	24	1.99
42799118--42799153	2	18.0	2	100	0	72	50	0	0	50	1.00
42799859--42800066	40	5.2	40	81	7	226	25	21	27	25	1.99
42799916--42800070	79	2.0	79	83	7	199	25	20	28	25	1.99
42802043--42802080	20	1.9	20	89	10	60	36	15	7	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42802533--42802576	22	2.0	22	90	0	70	54	4	0	40	1.21
42805234--42805275	19	2.3	19	83	4	50	54	0	2	42	1.13
42805478--42805506	6	4.8	6	100	0	58	34	0	0	65	0.93
42805895--42805945	25	2.0	25	88	0	75	9	27	0	62	1.26
42806403--42806454	25	2.1	25	82	7	61	28	11	25	34	1.91
42808955--42809011	28	2.0	29	93	3	98	52	14	3	29	1.58
42810350--42810424	25	3.0	24	75	7	60	60	0	1	38	1.06
42810856--42810902	17	2.8	17	80	3	51	31	4	0	63	1.13
42811788--42811843	18	2.8	20	78	15	71	32	21	17	28	1.96
42812015--42812086	35	2.1	35	94	0	126	40	13	12	33	1.83
42812015--42812097	35	2.4	34	88	8	121	39	14	14	31	1.86
42812069--42812164	34	2.8	35	80	9	101	40	15	13	30	1.86
42812412--42812516	28	3.8	28	82	7	119	60	7	12	20	1.56
42824112--42824191	36	2.2	36	97	0	151	21	25	26	27	1.99
42839408--42839465	19	3.2	18	80	9	64	20	12	24	43	1.86
42840306--42840358	28	1.9	27	88	3	79	41	0	11	47	1.39
42840303--42840364	27	2.3	26	81	8	79	38	0	9	51	1.35
42840359--42840406	20	2.5	20	86	10	64	25	6	2	66	1.26
42844051--42844101	5	10.4	5	80	18	54	19	1	0	78	0.85
42844051--42844108	10	5.2	11	78	17	66	20	1	0	77	0.86
42844051--42844108	20	2.6	25	79	20	74	20	1	0	77	0.86
42844049--42844107	22	2.7	22	78	19	61	22	1	0	76	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42844897--42845076	96	1.9	95	83	3	229	28	13	25	32	1.93
42845673--42845734	27	2.3	26	78	8	70	37	0	11	51	1.38
42845729--42845776	20	2.5	20	86	10	64	25	6	2	66	1.26
42854865--42854902	19	2.0	19	100	0	76	42	5	10	42	1.62
42854908--42854953	24	1.9	24	95	0	83	28	6	13	52	1.65
42866457--42866502	20	2.3	20	85	7	58	34	28	6	30	1.82
42868742--42868901	29	5.5	30	88	8	222	27	25	13	33	1.94
42868742--42868901	59	2.8	57	89	4	223	27	25	13	33	1.94
42876622--42876781	29	5.5	30	88	8	222	27	25	13	33	1.94
42876622--42876781	59	2.8	57	89	4	223	27	25	13	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444