Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  169  of  444  ( 53255 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46570418--46570479
24
2.5
25
77
15
65
53
1
6
38
1.37
46572294--46572601
44
6.8
45
69
13
186
28
23
16
31
1.96
46572287--46572602
89
3.5
89
73
12
284
28
22
16
32
1.96
46580371--46580530
83
1.9
83
88
0
239
22
18
33
26
1.97
46580855--46580894
19
2.0
20
85
4
55
50
5
22
22
1.68
46582928--46583200
39
6.7
39
84
10
332
29
30
21
18
1.97
46583050--46583148
50
2.0
50
97
0
189
29
31
20
19
1.97
46583013--46583187
89
2.0
89
95
0
314
29
31
20
18
1.97
46583273--46583354
28
2.9
28
83
0
101
29
24
10
35
1.90
46587524--46587685
77
2.1
77
94
2
281
33
23
15
27
1.95
46588330--46588386
29
2.0
28
83
6
71
64
8
5
21
1.41
46588684--46588745
24
2.5
25
77
15
65
53
1
6
38
1.37
46590986--46591568
27
21.6
27
86
3
737
27
21
9
41
1.85
46592809--46592856
25
1.9
25
86
0
69
33
25
16
25
1.96
46592899--46592959
20
3.0
20
92
0
104
34
11
21
32
1.89
46593009--46593137
24
5.4
24
94
2
206
29
21
22
26
1.99
46593009--46593137
47
2.7
47
92
3
204
29
21
22
26
1.99
46593343--46593437
31
3.1
31
98
0
181
38
15
22
23
1.92
46593512--46593537
12
2.2
12
100
0
52
23
15
46
15
1.83
46604557--46604777
40
5.6
40
87
1
311
23
19
29
27
1.98
46614053--46614220
46
3.6
46
74
16
184
22
17
28
31
1.97
46614049--46614256
93
2.2
93
93
1
355
22
17
29
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46614049--46614306
93
2.9
89
85
6
285
21
18
29
30
1.97
46617277--46617345
15
4.6
15
85
0
93
11
18
13
56
1.66
46617268--46617355
30
3.0
30
83
1
97
10
18
15
55
1.68
46619787--46620103
47
6.7
47
89
4
465
29
31
7
31
1.85
46619787--46620103
96
3.3
94
89
5
483
29
31
7
31
1.85
46623842--46624190
43
8.1
43
94
0
601
32
32
21
13
1.92
46623842--46624190
171
2.0
172
93
1
603
32
32
21
13
1.92
46624173--46624384
40
5.2
42
82
4
211
25
27
22
24
2.00
46626319--46626635
47
6.7
47
89
4
465
29
31
7
31
1.85
46626319--46626635
96
3.3
94
89
5
483
29
31
7
31
1.85
46631212--46631391
39
4.6
40
86
8
262
24
23
27
25
2.00
46637359--46637539
40
4.6
40
86
8
255
24
22
27
24
2.00
46637358--46637540
78
2.3
81
86
6
268
25
22
27
24
2.00
46637358--46637573
78
2.8
78
81
9
228
26
21
27
24
1.99
46639613--46639763
40
3.8
40
77
13
134
27
23
26
22
2.00
46639650--46639779
40
3.2
40
77
4
138
24
23
27
23
2.00
46644531--46644681
40
3.8
40
77
13
134
27
23
26
22
2.00
46644568--46644697
40
3.2
40
77
4
138
24
23
27
23
2.00
46653506--46653687
40
4.6
40
85
9
248
24
23
27
24
2.00
46653505--46653687
79
2.3
81
85
7
259
25
22
27
24
2.00
46653535--46653722
79
2.4
79
83
7
222
27
21
26
24
1.99
46656155--46656423
46
5.8
46
74
14
239
20
20
29
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46656201--46656369
47
3.6
47
75
16
197
21
20
29
28
1.98
46656151--46656416
93
2.9
93
93
0
442
21
20
29
28
1.98
46664151--46664179
14
2.0
15
93
6
51
27
0
20
51
1.47
46665307--46665434
43
3.0
43
83
4
186
27
16
26
29
1.97
46676979--46677024
24
1.9
24
82
8
58
26
0
43
30
1.55
46678195--46678312
27
4.4
27
83
0
146
30
17
25
26
1.97
46682586--46682713
47
2.7
47
87
2
177
23
17
27
31
1.97
46685827--46685867
20
2.0
20
100
0
82
43
0
21
34
1.53
46685832--46685870
11
3.7
11
80
13
55
41
0
20
38
1.53
46685850--46686343
48
10.3
48
84
10
636
36
6
26
30
1.82
46685993--46686065
35
2.1
35
94
0
128
38
6
23
31
1.81
46685896--46686247
131
2.6
135
90
6
541
36
6
26
30
1.82
46685945--46686209
83
3.0
83
85
13
386
36
7
26
30
1.84
46685850--46686209
179
2.0
179
96
0
666
36
7
26
30
1.83
46686188--46686307
60
2.0
60
91
3
197
35
4
28
32
1.76
46686140--46686343
108
1.9
108
91
0
336
35
5
28
30
1.81
46686484--46686586
37
2.8
37
93
0
179
24
20
31
24
1.98
46690123--46690286
71
2.3
71
100
0
328
18
28
17
35
1.94
46690123--46690320
71
2.8
70
91
3
258
20
28
17
33
1.95
46692637--46692735
28
3.5
28
81
9
112
29
25
16
29
1.96
46700312--46700410
28
3.5
28
81
9
112
29
25
16
29
1.96
46705438--46705652
44
4.8
45
86
7
287
25
28
17
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46705393--46705649
44
5.6
45
86
6
281
24
28
17
29
1.97
46705433--46705652
90
2.4
90
84
10
297
25
28
17
28
1.98
46705393--46705652
137
1.9
137
85
7
368
25
28
17
28
1.97
46709523--46709660
66
2.1
66
91
4
226
34
25
5
35
1.78
46724854--46724915
30
2.1
30
87
0
88
40
4
22
32
1.75
46727006--46727175
47
3.7
47
79
15
194
21
21
29
27
1.99
46727006--46727176
92
1.8
93
94
1
308
21
21
29
27
1.98
46730072--46730150
30
2.6
31
80
11
92
11
17
15
55
1.68
46730081--46730160
15
5.4
15
77
7
83
10
17
13
58
1.62
46732548--46732714
46
3.6
45
72
12
160
21
21
28
28
1.99
46732545--46732715
92
1.8
93
89
1
272
21
21
28
28
1.99
46737373--46737417
20
2.3
20
88
3
65
28
17
26
26
1.98
46737506--46737558
28
1.9
28
84
3
72
28
18
26
26
1.98
46742848--46742892
20
2.3
20
88
3
65
28
17
26
26
1.98
46742981--46743033
28
1.9
28
84
3
72
28
18
26
26
1.98
46747635--46747728
45
2.1
46
89
2
145
47
20
6
25
1.73
46753040--46753081
15
2.9
15
86
10
52
73
7
2
16
1.15
46753065--46753335
75
3.6
75
88
2
377
59
9
16
14
1.61
46753065--46753334
150
1.8
148
89
3
425
58
9
16
14
1.61
46769175--46769207
3
11.0
3
100
0
66
66
0
0
33
0.92
46769762--46769825
22
3.0
21
76
13
67
28
0
1
70
0.97
46770787--46770889
43
2.4
43
96
1
188
21
30
21
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46771086--46771232
54
2.9
51
80
9
174
37
19
14
27
1.92
46771189--46771399
88
2.4
86
79
6
237
33
20
17
28
1.95
46771458--46771595
71
1.9
71
88
5
208
38
22
14
24
1.92
46771608--46771777
54
3.1
55
86
6
229
37
14
16
32
1.88
46771867--46772217
74
4.9
71
78
10
347
32
22
16
28
1.95
46773043--46773076
18
1.9
17
94
5
59
0
26
0
73
0.83
46785041--46785082
3
14.0
3
100
0
84
66
0
0
33
0.92
46786923--46786956
12
3.0
12
91
8
54
52
5
0
41
1.25
46788551--46788595
23
2.0
22
87
12
65
37
4
6
51
1.49
46798101--46798285
40
4.6
40
94
1
309
25
28
22
23
1.99
46798656--46798699
22
2.0
22
100
0
88
45
22
4
27
1.72
46806185--46806368
40
4.6
40
92
2
300
27
26
22
23
2.00
46807591--46807615
11
2.3
11
100
0
50
0
12
0
88
0.53
46808318--46808361
15
2.9
15
81
18
56
25
6
0
68
1.14
46808318--46808351
8
4.6
7
89
10
50
26
5
0
67
1.13
46819897--46820088
45
4.3
46
80
7
200
21
17
12
47
1.81
46819913--46820090
90
2.0
90
86
4
252
22
16
12
47
1.81
46822784--46822885
42
2.4
42
86
3
152
20
31
29
18
1.97
46825440--46825577
40
3.5
40
83
2
152
11
31
21
35
1.89
46825440--46825568
20
6.4
20
82
7
138
12
31
20
34
1.90
46825442--46825568
60
2.1
60
86
2
175
12
32
20
34
1.90
46833265--46833428
71
2.3
71
98
0
319
35
17
27
18
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46837917--46837946
15
2.0
15
100
0
60
46
20
13
20
1.83
46840863--46841564
48
14.4
48
92
2
1125
30
26
7
35
1.84
46840863--46841564
98
7.2
96
91
2
1125
30
26
7
35
1.84
46840863--46841564
146
4.8
146
94
1
1210
30
26
7
35
1.84
46844787--46844882
28
3.4
28
77
11
97
35
28
15
20
1.93
46844914--46845242
40
8.2
40
88
2
421
27
27
19
25
1.99
46844914--46845202
80
3.6
80
93
0
465
28
26
19
25
1.99
46848341--46848638
40
7.5
40
91
1
447
22
23
29
25
1.99
46855890--46856187
40
7.5
40
90
1
438
22
22
29
25
1.99
46857728--46858381
48
13.4
48
92
2
1011
30
26
7
35
1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444