genome.fa.s10.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  137  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36425108--36425204	27	3.6	27	87	2	115	36	22	22	18	1.95
36426020--36426195	24	7.4	24	94	1	293	30	19	21	28	1.98
36426397--36426475	31	2.5	31	95	0	140	30	18	24	26	1.98
36428614--36428735	46	2.6	47	84	5	147	26	22	14	36	1.93
36429983--36430083	39	2.6	39	90	0	166	28	1	22	46	1.63
36431188--36431223	18	1.9	19	88	5	56	19	22	2	55	1.56
36431346--36431385	19	2.1	19	100	0	80	37	0	15	47	1.45
36432368--36432407	2	19.5	2	84	5	53	52	5	0	42	1.23
36433532--36433647	43	2.7	44	83	10	134	27	27	18	25	1.98
36441748--36441819	35	2.1	35	89	0	108	27	20	29	22	1.99
36444822--36445043	40	5.6	40	91	1	340	28	25	21	23	1.99
36447273--36447333	30	2.0	30	100	0	122	26	6	16	50	1.69
36450418--36450578	29	5.6	29	93	0	259	26	32	14	26	1.95
36450360--36450578	87	2.5	87	82	2	244	26	33	15	25	1.95
36466036--36466091	28	2.0	28	92	0	94	28	17	25	28	1.98
36466042--36466109	28	2.4	28	85	4	84	26	16	29	27	1.97
36469276--36469321	2	23.0	2	95	0	83	50	2	0	47	1.13
36469403--36469481	29	2.7	29	94	0	131	37	12	24	25	1.90
36470695--36470723	9	3.3	9	90	9	51	89	0	0	10	0.48
36479744--36479845	27	3.8	27	82	8	109	37	21	24	16	1.94
36487729--36487821	27	3.5	26	82	7	105	39	22	23	13	1.90
36487729--36487840	27	4.1	27	79	5	102	36	23	23	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36491329--36491364	7	5.1	7	86	0	54	16	50	2	30	1.60
36494911--36494953	16	2.7	15	85	7	59	32	13	18	34	1.90
36494897--36494948	16	3.3	15	81	7	59	30	11	17	40	1.85
36497191--36497215	13	1.9	13	100	0	50	0	40	28	32	1.57
36503632--36503685	24	2.3	24	90	3	83	37	20	22	20	1.95
36508163--36508275	40	2.8	40	86	0	154	23	23	29	23	1.99
36511966--36512145	77	2.3	79	84	7	233	25	22	27	25	2.00
36511967--36512148	40	4.6	39	80	11	212	24	21	28	25	1.99
36520096--36520276	78	2.3	80	84	6	235	24	22	28	24	1.99
36520097--36520279	40	4.6	39	80	10	212	24	21	28	25	1.99
36524847--36524979	38	3.5	36	76	10	122	25	21	27	24	1.99
36524873--36525015	40	3.7	38	81	7	146	23	23	28	25	1.99
36528541--36528686	39	3.8	39	92	5	237	24	32	19	22	1.97
36528541--36528686	76	1.9	77	90	6	235	24	32	19	22	1.97
36531346--36531488	39	3.7	39	90	2	234	22	30	20	26	1.99
36531306--36531487	77	2.3	79	89	2	269	23	29	22	24	1.99
36536208--36536294	33	2.7	33	85	3	115	37	14	21	25	1.92
36538691--36538833	39	3.7	39	90	2	234	22	30	20	26	1.99
36538651--36538832	77	2.3	79	89	2	269	23	29	22	24	1.99
36546712--36546854	39	3.7	39	90	2	234	22	30	20	26	1.99
36546672--36546853	77	2.3	79	89	2	269	23	29	22	24	1.99
36548629--36548724	42	2.3	42	81	0	129	17	32	29	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36550436--36550592	42	3.6	44	74	9	128	33	26	15	24	1.95
36550436--36550592	43	3.7	42	75	7	129	33	26	15	24	1.95
36558627--36558677	28	2.0	28	85	14	74	68	9	17	3	1.33
36559597--36559654	16	3.8	15	75	8	55	63	1	3	31	1.21
36562037--36562151	56	2.1	56	81	3	133	51	3	4	40	1.39
36564988--36565100	35	3.2	35	65	18	97	25	9	23	40	1.85
36564987--36565133	72	2.0	72	98	0	285	24	9	25	40	1.85
36565851--36565883	12	2.8	12	95	0	57	51	0	6	42	1.26
36574867--36574923	16	3.4	16	77	15	62	82	0	12	5	0.82
36574871--36574934	19	3.4	19	72	10	51	79	0	12	7	0.92
36574866--36574905	21	1.9	21	89	0	62	85	0	10	5	0.75
36577660--36577724	29	2.3	29	81	2	69	43	4	24	27	1.74
36578195--36578320	43	2.9	44	85	4	168	26	15	23	34	1.95
36580384--36580447	29	2.2	30	94	2	112	34	23	1	40	1.64
36580445--36580517	30	2.5	30	86	2	94	32	23	2	41	1.69
36582009--36582177	18	9.7	17	68	14	71	28	13	12	45	1.79
36582015--36582174	17	9.1	18	69	16	79	29	12	11	46	1.76
36584797--36585011	47	4.6	47	89	2	317	26	28	11	33	1.91
36584812--36585011	93	2.1	94	92	0	330	25	29	12	34	1.91
36589149--36589465	79	4.0	77	80	10	309	25	27	21	24	1.99
36589149--36589465	40	8.0	39	82	7	293	25	27	21	24	1.99
36589149--36589466	119	2.7	117	78	12	342	25	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36590950--36591039	46	1.9	48	84	4	121	27	27	8	35	1.87
36591023--36591258	47	5.0	46	84	3	276	25	30	11	33	1.91
36605373--36605402	13	2.2	14	94	5	53	83	0	0	16	0.65
36613300--36613791	78	5.9	87	80	12	418	28	16	20	34	1.94
36613370--36613867	77	6.3	77	81	9	527	28	17	19	35	1.94
36613385--36613822	235	1.8	236	85	7	616	29	16	20	33	1.95
36614050--36614136	30	3.0	29	85	6	113	33	17	3	45	1.65
36615626--36615782	53	3.0	49	74	17	138	29	12	12	45	1.79
36615733--36615782	17	3.1	16	80	8	57	30	12	12	46	1.77
36616598--36616664	21	3.6	18	76	19	57	37	0	1	61	1.05
36616599--36616648	24	2.1	23	85	10	66	38	0	0	62	0.96
36618306--36618369	30	2.1	30	83	11	78	26	1	1	70	1.05
36618296--36618369	38	2.0	35	82	12	87	27	1	2	68	1.10
36623576--36623648	35	2.1	35	94	0	128	27	13	8	50	1.70
36625523--36625572	21	2.4	21	100	0	100	42	0	0	58	0.98
36625531--36625600	26	2.6	28	72	18	78	42	0	0	57	0.99
36625582--36625726	57	2.5	58	86	4	188	43	1	3	51	1.27
36628119--36628621	269	1.9	262	86	5	724	30	16	24	28	1.96
36634714--36634796	26	3.2	26	98	0	157	38	19	16	25	1.92
36640434--36640542	56	2.0	53	82	12	132	36	18	16	28	1.92
36641737--36641903	40	4.2	40	78	6	160	25	22	27	24	2.00
36646421--36646454	17	2.0	17	88	0	50	70	0	11	17	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36647186--36647260	34	2.2	34	80	2	89	22	4	20	53	1.62
36647150--36647242	47	1.9	48	82	10	118	23	4	18	53	1.62
36648284--36648332	25	1.9	26	91	4	82	24	4	22	48	1.67
36650679--36650774	26	3.7	26	84	1	111	41	17	13	27	1.87
36650679--36650786	53	2.1	53	82	1	128	42	16	14	25	1.87
36653938--36654102	43	3.9	42	79	9	163	33	24	16	24	1.96
36659342--36659381	20	2.0	20	90	9	64	47	0	0	52	1.00
36666204--36666272	17	4.2	16	70	15	52	37	1	2	57	1.22
36668273--36668353	32	2.5	32	85	0	99	14	17	37	30	1.90
36676588--36676616	14	2.0	15	93	6	51	48	6	6	37	1.57
36686116--36686204	24	3.8	24	74	5	83	19	20	20	40	1.92
36686143--36686212	24	2.9	25	75	6	65	20	22	15	41	1.90
36689522--36689675	74	2.1	74	91	1	245	33	8	7	50	1.61
36693582--36693618	9	4.2	9	96	3	67	51	0	0	48	1.00
36693597--36693682	29	3.1	27	70	20	63	44	3	1	51	1.26
36699321--36699492	93	1.8	93	96	0	317	27	30	22	20	1.98
36699313--36699488	46	3.8	46	81	10	232	28	29	21	20	1.98
36701873--36701961	30	3.0	30	80	8	101	57	15	16	10	1.65
36701873--36701952	15	5.4	15	80	7	92	58	13	17	10	1.62
36701884--36701961	15	5.2	15	78	9	79	56	15	16	11	1.67
36704878--36705049	93	1.8	93	96	0	317	27	30	22	20	1.98
36704870--36705045	46	3.8	46	81	10	232	28	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36714308--36714332	2	12.5	2	100	0	50	52	0	0	48	1.00
36714758--36714786	7	4.3	7	95	4	51	89	0	10	0	0.48
36715707--36715747	21	2.0	20	86	9	57	31	17	2	48	1.60
36717735--36717772	19	2.0	19	89	0	58	57	0	0	42	0.98
36718262--36718342	2	42.5	2	83	14	109	49	1	1	48	1.17
36720185--36720232	21	2.3	21	88	0	69	18	41	0	39	1.51
36720614--36720658	22	2.1	21	91	4	72	37	42	4	15	1.67
36723367--36723423	13	4.5	12	76	18	53	1	26	0	71	0.95
36723747--36723807	16	3.9	15	75	10	52	65	3	3	27	1.24
36734558--36734815	40	6.5	40	92	1	394	23	24	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444