genome.fa.s10.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  150  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40638195--40638382	46	4.1	46	72	19	142	28	28	20	21	1.98
40644867--40644989	46	2.7	44	86	7	149	27	20	29	22	1.98
40646890--40646959	27	2.5	28	93	2	124	28	12	25	32	1.93
40650477--40650549	26	2.8	26	81	4	76	19	17	23	39	1.92
40651463--40651494	17	1.9	17	93	6	57	46	12	21	18	1.82
40665353--40665526	49	3.5	49	85	1	249	23	17	28	29	1.97
40665345--40665526	99	1.8	99	93	0	319	23	17	29	29	1.97
40667579--40667641	31	2.0	31	90	0	99	23	22	15	38	1.93
40667836--40667981	50	3.0	48	84	11	183	27	22	20	29	1.99
40667836--40667981	24	6.0	24	86	9	183	27	22	20	29	1.99
40668026--40668072	20	2.5	18	87	12	76	36	21	8	34	1.84
40668030--40668069	20	2.0	20	100	0	80	35	20	10	35	1.86
40668069--40668125	25	2.3	25	90	6	89	22	17	22	36	1.94
40672516--40672578	26	2.4	26	78	5	65	22	20	20	36	1.95
40672539--40672591	26	2.0	26	88	0	79	20	13	22	43	1.86
40674595--40674706	42	2.6	43	77	5	111	27	21	21	29	1.98
40676481--40676656	46	3.8	46	80	12	225	21	21	28	28	1.98
40676478--40676648	93	1.8	93	96	0	315	21	21	29	28	1.98
40679606--40679684	15	5.4	15	77	10	83	10	17	13	58	1.63
40679597--40679683	29	3.0	29	81	8	95	10	17	16	56	1.67
40682052--40682227	46	3.8	46	80	12	225	21	21	28	28	1.98
40682049--40682219	93	1.8	93	96	0	315	21	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40688140--40688315	46	3.8	45	81	10	212	21	21	29	28	1.98
40688136--40688307	93	1.8	93	94	0	308	20	21	30	27	1.98
40699026--40699154	46	2.8	46	96	0	231	20	21	28	29	1.98
40702070--40702117	14	3.4	15	80	11	57	10	16	12	60	1.58
40704489--40704664	46	3.8	45	81	10	212	21	21	29	28	1.98
40704485--40704656	93	1.8	93	94	0	308	20	21	30	27	1.98
40715369--40715544	46	3.8	45	81	10	212	21	21	29	28	1.98
40715365--40715536	93	1.8	93	94	0	308	20	21	30	27	1.98
40719190--40719250	30	2.0	30	87	0	86	40	6	22	29	1.79
40723218--40723287	27	2.6	27	95	2	122	30	27	14	28	1.95
40730911--40731009	28	3.5	28	81	9	112	29	25	16	29	1.96
40738572--40738670	28	3.5	28	81	9	112	29	25	16	29	1.96
40740774--40740843	27	2.6	27	93	2	113	30	25	14	30	1.95
40749081--40749265	79	2.3	82	83	7	229	24	24	27	23	2.00
40749082--40749273	40	4.8	40	79	7	151	24	24	28	22	2.00
40749081--40749298	79	2.7	79	79	6	183	24	23	27	24	2.00
40750741--40750988	40	6.2	40	88	2	331	24	22	27	25	2.00
40753284--40753422	40	3.5	38	78	10	127	25	23	27	23	2.00
40753284--40753466	39	4.6	39	77	8	158	24	24	27	24	2.00
40762091--40762258	40	4.2	40	80	3	196	25	22	27	25	2.00
40770207--40770285	41	1.9	42	89	2	124	22	17	29	30	1.97
40774119--40774331	46	4.6	47	90	1	297	20	23	13	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40774119--40774334	93	2.3	92	87	2	299	20	23	13	42	1.88
40776203--40776244	18	2.4	18	82	17	54	0	23	0	76	0.79
40776453--40776502	21	2.5	19	72	27	50	48	2	0	50	1.12
40789308--40789495	40	4.7	40	87	1	252	26	28	20	23	1.99
40789288--40789499	80	2.7	79	86	3	291	27	27	20	24	1.99
40790537--40790667	42	3.1	42	86	2	172	28	17	22	32	1.96
40790546--40790689	42	3.4	42	83	2	119	27	19	23	29	1.98
40795828--40795862	8	4.4	8	88	0	52	5	22	17	54	1.64
40795828--40795862	16	2.2	16	100	0	70	5	22	17	54	1.64
40807049--40807256	40	5.2	40	80	2	184	25	24	25	24	2.00
40807093--40807256	80	2.0	80	83	4	206	24	25	27	23	2.00
40811944--40812101	43	3.7	44	80	4	169	24	17	24	32	1.97
40811944--40812106	85	1.9	86	82	3	204	24	17	24	33	1.96
40816499--40816523	2	12.5	2	100	0	50	52	0	0	48	1.00
40818525--40818585	30	2.0	30	83	0	77	31	22	8	37	1.84
40820140--40820306	55	3.1	54	82	9	214	34	17	24	22	1.96
40823398--40823467	28	2.5	28	90	4	106	27	12	27	32	1.93
40823893--40823929	17	2.2	17	100	0	74	29	10	16	43	1.82
40829490--40829611	46	2.7	46	85	0	172	22	22	27	28	1.99
40829839--40829876	19	2.0	20	85	15	53	36	0	23	39	1.55
40833430--40833457	2	14.0	2	100	0	56	50	0	0	50	1.00
40834008--40834077	28	2.5	28	88	4	97	25	14	27	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40842349--40842418	28	2.5	28	90	4	106	32	27	12	27	1.93
40849540--40849648	37	2.9	37	95	0	191	27	30	19	22	1.98
40849795--40849929	48	2.8	48	93	0	225	30	28	7	34	1.84
40849899--40850092	47	4.1	47	94	0	325	26	28	11	32	1.92
40849967--40850044	23	3.2	25	64	29	69	29	32	10	28	1.90
40849992--40850067	22	3.3	22	65	28	59	25	31	13	30	1.93
40853661--40854005	40	8.6	40	86	1	458	25	28	21	24	1.99
40855282--40855427	37	3.9	37	89	0	229	30	29	17	22	1.97
40855574--40855708	48	2.8	48	93	0	225	30	28	7	33	1.85
40855678--40855871	47	4.1	47	94	0	325	26	28	11	32	1.92
40855746--40855823	23	3.2	25	64	29	69	29	32	10	28	1.90
40855771--40855846	22	3.3	22	65	28	59	25	31	13	30	1.93
40859833--40859902	28	2.5	28	90	4	106	32	27	12	27	1.93
40870603--40870788	40	4.7	40	89	5	245	26	26	21	25	1.99
40873440--40873685	40	6.2	40	87	1	325	27	28	19	23	1.99
40879689--40879868	54	3.3	54	86	1	245	30	24	6	38	1.81
40879681--40879868	81	2.3	81	89	0	277	29	23	7	39	1.82
40879689--40879868	27	6.7	27	85	1	218	30	24	6	38	1.81
40879904--40880029	27	4.7	27	87	3	173	39	23	9	27	1.85
40879871--40880026	54	2.9	54	82	3	163	39	20	12	28	1.88
40879904--40880053	81	1.9	81	84	5	205	41	21	9	28	1.84
40879908--40880055	54	2.7	55	80	4	167	40	22	9	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40880020--40880113	27	3.4	27	80	13	111	41	18	8	31	1.80
40880123--40880266	27	5.3	27	88	1	191	29	22	6	40	1.79
40880302--40880453	27	5.6	27	83	8	193	42	21	7	28	1.81
40880302--40880451	81	1.9	81	88	2	230	42	21	8	28	1.81
40879728--40880483	398	1.9	398	94	1	1327	36	20	8	33	1.84
40881441--40881611	25	7.1	23	87	5	216	28	22	21	27	1.99
40881658--40881766	20	5.4	20	94	0	191	33	21	11	34	1.88
40883011--40883088	27	2.9	26	78	14	86	21	20	21	35	1.96
40883126--40883465	27	12.6	27	77	6	186	33	10	19	36	1.86
40883219--40883411	81	2.4	80	87	2	262	30	9	21	39	1.84
40883389--40883523	27	5.0	27	90	0	198	41	11	21	25	1.86
40883553--40883628	27	2.8	27	85	0	89	32	10	18	38	1.85
40883562--40883666	27	3.9	26	77	7	84	35	10	16	38	1.83
40885460--40885526	25	2.7	24	81	4	71	28	25	20	25	1.99
40885460--40885542	25	3.4	24	80	8	69	30	21	21	26	1.99
40885665--40885756	42	2.2	42	96	3	168	31	14	20	33	1.92
40885780--40885863	31	2.7	31	96	1	152	27	17	27	27	1.98
40887042--40887105	31	2.1	31	93	0	110	23	23	15	37	1.93
40887320--40887438	23	5.1	23	91	1	193	31	22	19	26	1.98
40887487--40887533	20	2.3	20	85	0	76	31	23	12	31	1.92
40887570--40887617	25	1.9	25	86	0	69	25	16	25	33	1.96
40891868--40891931	31	2.1	31	93	0	110	23	23	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40892146--40892263	23	5.1	23	90	1	182	30	22	20	26	1.98
40892315--40892379	20	3.2	20	93	0	112	32	21	12	33	1.90
40892315--40892368	11	5.3	11	70	17	53	31	20	12	35	1.90
40892416--40892463	25	1.9	25	91	0	78	25	14	25	35	1.94
40896573--40896636	31	2.1	31	93	0	110	23	23	15	37	1.93
40896933--40896985	9	5.4	9	75	16	52	37	20	7	33	1.81
40896927--40896991	20	3.2	20	97	0	121	33	21	10	33	1.88
40896927--40896980	11	5.3	11	74	17	62	33	20	11	35	1.88
40897028--40897075	25	1.9	25	86	0	69	25	16	25	33	1.96
40899453--40899496	19	2.4	18	85	7	54	40	9	0	50	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444